Improved diagnostic yield of neuromuscular disorders applying clinical exome sequencing in patients arising from a consanguineous population

被引:37
作者
Fattahi, Z. [1 ,2 ]
Kalhor, Z. [1 ]
Fadaee, M. [1 ,2 ]
Vazehan, R. [2 ]
Parsimehr, E. [2 ]
Abolhassani, A. [2 ]
Beheshtian, M. [1 ,2 ]
Zamani, G. [3 ]
Nafissi, S. [4 ]
Nilipour, Y. [5 ]
Akbari, M. R. [1 ,6 ,7 ]
Kahrizi, K. [1 ]
Kariminejad, A. [2 ]
Najmabadi, H. [1 ,2 ]
机构
[1] Univ Social Welf & Rehabil Sci, Genet Res Ctr, Tehran, Iran
[2] Kariminejad Najmabadi Pathol & Genet Ctr, Tehran, Iran
[3] Univ Tehran Med Sci, Dept Neurol, Tehran, Iran
[4] Univ Tehran Med Sci, Pediat Ctr Excellence, Childrens Med Ctr, Dept Pediat Neurol, Tehran, Iran
[5] Shahid Beheshti Univ Med Sci, Mofid Children Hosp, Pediatr Pathol Res Ctr, Tehran, Iran
[6] Womens Coll Res Inst, Womens Coll Hosp, Toronto, ON, Canada
[7] Univ Toronto, Dalla Lana Sch Publ Hlth, Toronto, ON, Canada
关键词
clinical exome sequencing; consanguineous population; diagnostic yield; neuromuscular disorders; GIRDLE MUSCULAR-DYSTROPHY; MOLECULAR DIAGNOSIS; GENETIC-BASIS; TOOL; MUTATION; IMPACT; DEFICIENCY; EFFICIENT; STRATEGY; SPECTRUM;
D O I
10.1111/cge.12810
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
Neuromuscular diseases (NMDs) include a broad range of disorders affecting muscles, nerves and neuromuscular junctions. Their overlapping phenotypes and heterogeneous genetic nature have created challenges in diagnosis which calls for the implementation of massive parallel sequencing as a candidate strategy to increase the diagnostic yield. In this study, total of 45 patients, mostly offspring of consanguineous marriages were examined using whole exome sequencing. Data analysis was performed to identify the most probable pathogenic rare variants in known NMD genes which led to identification of causal variants for 33 out of 45 patients (73.3%) in the following known genes: CAPN3, Col6A1, Col6A3, DMD, DYSF, FHL1, GJB1, ISPD, LAMA2, LMNA, PLEC1, RYR1, SGCA, SGCB, SYNE1, TNNT1 and 22 novel pathogenic variants were detected. Today, the advantage of whole exome sequencing in clinical diagnostic strategies of heterogeneous disorders is clear. In this cohort, a diagnostic yield of 73.3% was achieved which is quite high compared to the overall reported diagnostic yield of 25% to 50%. This could be explained by the consanguineous background of these patients and is another strong advantage of offering clinical exome sequencing in diagnostic laboratories, especially in populations with high rate of consanguinity.
引用
收藏
页码:386 / 402
页数:17
相关论文
共 74 条
[1]   Impact of new genomic tools on the practice of clinical genetics in consanguineous populations: the Saudi experience [J].
Alkuraya, F. S. .
CLINICAL GENETICS, 2013, 84 (03) :203-208
[2]   A Comprehensive Genomic Approach for Neuromuscular Diseases Gives a High Diagnostic Yield [J].
Ankala, Arunkanth ;
da Silva, Cristina ;
Gualandi, Francesca ;
Ferlini, Alessandra ;
Bean, Lora J. H. ;
Collins, Christin ;
Tanner, Alice K. ;
Hegde, Madhuri R. .
ANNALS OF NEUROLOGY, 2015, 77 (02) :206-214
[3]   A Practical Approach to Molecular Diagnostic Testing in Neuromuscular Diseases [J].
Arnold, W. David ;
Flanigan, Kevin M. .
PHYSICAL MEDICINE AND REHABILITATION CLINICS OF NORTH AMERICA, 2012, 23 (03) :589-+
[4]   Next Generation Sequencing in Nonsyndromic Intellectual Disability: From a Negative Molecular Karyotype to a Possible Causative Mutation Detection [J].
Athanasakis, Emmanouil ;
Licastro, Danilo ;
Faletra, Flavio ;
Fabretto, Antonella ;
Dipresa, Savina ;
Vozzi, Diego ;
Morgan, Anna ;
d'Adamo, Adamo P. ;
Pecile, Vanna ;
Biarnes, Xevi ;
Gasparini, Paolo .
AMERICAN JOURNAL OF MEDICAL GENETICS PART A, 2014, 164 (01) :170-176
[5]   Mutation of SYNE-1, encoding an essential component of the nuclear lamina, is responsible for autosomal recessive arthrogryposis [J].
Attali, Ruben ;
Warwar, Nasim ;
Israel, Ariel ;
Gurt, Irina ;
McNally, Elizabeth ;
Puckelwartz, Megan ;
Glick, Benjamin ;
Nevo, Yoram ;
Ben-Neriah, Ziva ;
Melki, Judith .
HUMAN MOLECULAR GENETICS, 2009, 18 (18) :3462-3469
[6]   Clinical whole-exome sequencing: are we there yet? [J].
Atwal, Paldeep Singh ;
Brennan, Marie-Louise ;
Cox, Rachel ;
Niaki, Michael ;
Platt, Julia ;
Homeyer, Margaret ;
Kwan, Andrea ;
Parkin, Sylvie ;
Schelley, Susan ;
Slattery, Leah ;
Wilnai, Yael ;
Bernstein, Jonathan Adam ;
Enns, Gregory M. ;
Hudgins, Louanne .
GENETICS IN MEDICINE, 2014, 16 (09) :717-719
[7]   EXOME SEQUENCING AS A SECOND-TIER DIAGNOSTIC APPROACH FOR CLINICALLY SUSPECTED DYSFERLINOPATHY PATIENTS [J].
Bartoli, Marc ;
Desvignes, Jean-Pierre ;
Levy, Nicolas ;
Krahn, Martin .
MUSCLE & NERVE, 2014, 50 (06) :1007-1010
[8]  
Biesecker LG, 2014, NEW ENGL J MED, V370, P2418, DOI [10.1056/NEJMra1312543, 10.1056/NEJMc1408914]
[9]   An Integrated Diagnosis Strategy for Congenital Myopathies [J].
Bohm, Johann ;
Vasli, Nasim ;
Malfatti, Edoardo ;
Le Gras, Stephanie ;
Feger, Claire ;
Jost, Bernard ;
Monnier, Nicole ;
Brocard, Julie ;
Karasoy, Hatice ;
Gerard, Marion ;
Walter, Maggie C. ;
Reilich, Peter ;
Biancalana, Valerie ;
Kretz, Christine ;
Messaddeq, Nadia ;
Marty, Isabelle ;
Lunardi, Joel ;
Romero, Norma B. ;
Laporte, Jocelyn .
PLOS ONE, 2013, 8 (06)
[10]   Molecular Diagnosis of Infantile Mitochondrial Disease with Targeted Next-Generation Sequencing [J].
Calvo, Sarah E. ;
Compton, Alison G. ;
Hershman, Steven G. ;
Lim, Sze Chern ;
Lieber, Daniel S. ;
Tucker, Elena J. ;
Laskowski, Adrienne ;
Garone, Caterina ;
Liu, Shangtao ;
Jaffe, David B. ;
Christodoulou, John ;
Fletcher, Janice M. ;
Bruno, Damien L. ;
Goldblatt, Jack ;
DiMauro, Salvatore ;
Thorburn, David R. ;
Mootha, Vamsi K. .
SCIENCE TRANSLATIONAL MEDICINE, 2012, 4 (118)