Bacterial communities on classroom surfaces vary with human contact

被引:113
作者
Meadow, James F. [1 ]
Altrichter, Adam E. [1 ]
Kembel, Steven W. [1 ,2 ]
Moriyama, Maxwell [1 ,3 ]
O'Connor, Timothy K. [1 ,4 ]
Womack, Ann M. [1 ]
Brown, G. Z. [1 ,3 ]
Green, Jessica L. [1 ,5 ]
Bohannan, Brendan J. M. [1 ]
机构
[1] Univ Oregon, Inst Ecol & Evolut, Biol & Built Environm Ctr, Eugene, OR 97403 USA
[2] Univ Quebec, Dept Biol Sci, Montreal, PQ H2X1 L7, Canada
[3] Univ Oregon, Dept Architecture, Energy Studies Bldg Lab, Eugene, OR 97403 USA
[4] Univ Arizona, Dept Ecol & Evolut Biol, Tucson, AZ 85721 USA
[5] Santa Fe Inst, Santa Fe, NM 87501 USA
来源
MICROBIOME | 2014年 / 2卷
关键词
Built environment; Microbial ecology; Indoor microbiology; Lactobacillus; DIVERSITY; CONTAMINATION; HANDS;
D O I
10.1186/2049-2618-2-7
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
Background: Humans can spend the majority of their time indoors, but little is known about the interactions between the human and built-environment microbiomes or the forces that drive microbial community assembly in the built environment. We sampled 16S rRNA genes from four different surface types throughout a university classroom to determine whether bacterial assemblages on each surface were best predicted by routine human interactions or by proximity to other surfaces within the classroom. We then analyzed our data with publicly-available datasets representing potential source environments. Results: Bacterial assemblages from the four surface types, as well as individual taxa, were indicative of different source pools related to the type of human contact each surface routinely encounters. Spatial proximity to other surfaces in the classroom did not predict community composition. Conclusions: Our results indicate that human-associated microbial communities can be transferred to indoor surfaces following contact, and that such transmission is possible even when contact is indirect, but that proximity to other surfaces in the classroom does not influence community composition.
引用
收藏
页数:7
相关论文
共 32 条
[1]  
[Anonymous], 2010, R LANG ENV STAT COMP
[2]  
[Anonymous], IMPLEMENTING REPRODC
[3]   QIIME allows analysis of high-throughput community sequencing data [J].
Caporaso, J. Gregory ;
Kuczynski, Justin ;
Stombaugh, Jesse ;
Bittinger, Kyle ;
Bushman, Frederic D. ;
Costello, Elizabeth K. ;
Fierer, Noah ;
Pena, Antonio Gonzalez ;
Goodrich, Julia K. ;
Gordon, Jeffrey I. ;
Huttley, Gavin A. ;
Kelley, Scott T. ;
Knights, Dan ;
Koenig, Jeremy E. ;
Ley, Ruth E. ;
Lozupone, Catherine A. ;
McDonald, Daniel ;
Muegge, Brian D. ;
Pirrung, Meg ;
Reeder, Jens ;
Sevinsky, Joel R. ;
Tumbaugh, Peter J. ;
Walters, William A. ;
Widmann, Jeremy ;
Yatsunenko, Tanya ;
Zaneveld, Jesse ;
Knight, Rob .
NATURE METHODS, 2010, 7 (05) :335-336
[4]   The Ribosomal Database Project: improved alignments and new tools for rRNA analysis [J].
Cole, J. R. ;
Wang, Q. ;
Cardenas, E. ;
Fish, J. ;
Chai, B. ;
Farris, R. J. ;
Kulam-Syed-Mohideen, A. S. ;
McGarrell, D. M. ;
Marsh, T. ;
Garrity, G. M. ;
Tiedje, J. M. .
NUCLEIC ACIDS RESEARCH, 2009, 37 :D141-D145
[5]   Bacterial Community Variation in Human Body Habitats Across Space and Time [J].
Costello, Elizabeth K. ;
Lauber, Christian L. ;
Hamady, Micah ;
Fierer, Noah ;
Gordon, Jeffrey I. ;
Knight, Rob .
SCIENCE, 2009, 326 (5960) :1694-1697
[6]   Circumpolar synchrony in big river bacterioplankton [J].
Crump, Byron C. ;
Peterson, Bruce J. ;
Raymond, Peter A. ;
Amon, Rainer M. W. ;
Rinehart, Amanda ;
McClelland, James W. ;
Holmes, Robert M. .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2009, 106 (50) :21208-21212
[7]   Household transmission of meticillin-resistant Staphylococcus aureus and other staphylococci [J].
Davis, Meghan F. ;
Iverson, Sally Ann ;
Baron, Patrick ;
Vasse, Aimee ;
Silbergeld, Ellen K. ;
Lautenbach, Ebbing ;
Morris, Daniel O. .
LANCET INFECTIOUS DISEASES, 2012, 12 (09) :703-716
[8]   Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB [J].
DeSantis, T. Z. ;
Hugenholtz, P. ;
Larsen, N. ;
Rojas, M. ;
Brodie, E. L. ;
Keller, K. ;
Huber, T. ;
Dalevi, D. ;
Hu, P. ;
Andersen, G. L. .
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2006, 72 (07) :5069-5072
[9]  
Dufrene M, 1997, ECOL MONOGR, V67, P345, DOI 10.1890/0012-9615(1997)067[0345:SAAIST]2.0.CO
[10]  
2