Integration of isothermal amplification methods in microfluidic devices: Recent advances

被引:131
作者
Giuffrida, Maria Chiara [1 ]
Spoto, Giuseppe [1 ,2 ]
机构
[1] Univ Catania, Dipartimento Sci Chim, Consorzio Interuniv Ist Nazl Biostrutture & Biosi, Viale Andrea Doria 6, Catania, Italy
[2] Univ Catania, Dipartimento Sci Chim, Viale Andrea Doria 6, I-95125 Catania, Italy
关键词
Microfluidics; Isothermal amplification; DNA; PCR; MicroRNA; RECOMBINASE POLYMERASE AMPLIFICATION; ROLLING CIRCLE AMPLIFICATION; NUCLEIC-ACID AMPLIFICATION; STRAND-DISPLACEMENT POLYMERIZATION; CHAIN-REACTION; MESSENGER-RNA; ABSOLUTE QUANTIFICATION; FLUORESCENCE DETECTION; DNA; ASSAY;
D O I
10.1016/j.bios.2016.11.045
中图分类号
Q6 [生物物理学];
学科分类号
071011 ;
摘要
The integration of nucleic acids detection assays in microfluidic devices represents a highly promising approach for the development of convenient, cheap and efficient diagnostic tools for clinical, food safety and environmental monitoring applications. Such tools are expected to operate at the point-of-care and in resource-limited settings. The amplification of the target nucleic acid sequence represents a key step for the development of sensitive detection protocols. The integration in microfluidic devices of the most popular technology for nucleic acids amplifications, polymerase chain reaction (PCR), is significantly limited by the thermal cycling needed to obtain the target sequence amplification. This review provides an overview of recent advances in integration of isothermal amplification methods in microfluidic devices. Isothermal methods, that operate at constant temperature, have emerged as promising alternative to PCR and greatly simplify the implementation of amplification methods in point-of-care diagnostic devices and devices to be used in resource-limited settings. Possibilities offered by isothermal methods for digital droplet amplification are discussed.
引用
收藏
页码:174 / 186
页数:13
相关论文
共 99 条
[41]   Circle-to-circle amplification on a digital microfluidic chip for amplified single molecule detection [J].
Kuhnemund, Malte ;
Witters, Daan ;
Nilsson, Mats ;
Lammertyn, Jeroen .
LAB ON A CHIP, 2014, 14 (16) :2983-2992
[42]   Microfluidic Mixing: A Review [J].
Lee, Chia-Yen ;
Chang, Chin-Lung ;
Wang, Yao-Nan ;
Fu, Lung-Ming .
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2011, 12 (05) :3263-3287
[43]   Rational, modular adaptation of enzyme-free DNA circuits to multiple detection methods [J].
Li, Bingling ;
Ellington, Andrew D. ;
Chen, Xi .
NUCLEIC ACIDS RESEARCH, 2011, 39 (16) :e110
[44]   Advances in isothermal amplification: novel strategies inspired by biological processes [J].
Li, Jia ;
Macdonald, Joanne .
BIOSENSORS & BIOELECTRONICS, 2015, 64 :196-211
[45]   Picoliter Well Array Chip-Based Digital Recombinase Polymerase Amplification for Absolute Quantification of Nucleic Acids [J].
Li, Zhao ;
Liu, Yong ;
Wei, Qingquan ;
Liu, Yuanjie ;
Liu, Wenwen ;
Zhang, Xuelian ;
Yu, Yude .
PLOS ONE, 2016, 11 (04)
[46]   A portable microchip for ultrasensitive and high-throughput assay of thrombin by rolling circle amplification and hemin/G-quadruplex system [J].
Lin, Xuexia ;
Chen, Qiushui ;
Liu, Wu ;
Li, Haifang ;
Lin, Jin-Ming .
BIOSENSORS & BIOELECTRONICS, 2014, 56 :71-76
[47]   Mutation detection and single-molecule counting using isothermal rolling-circle amplification [J].
Lizardi, PM ;
Huang, XH ;
Zhu, ZR ;
Bray-Ward, P ;
Thomas, DC ;
Ward, DC .
NATURE GENETICS, 1998, 19 (03) :225-232
[48]   An aptamer-based bio-barcode assay with isothermal recombinase polymerase amplification for cytochrome-c detection and anti-cancer drug screening [J].
Loo, Jacky ;
Lau, P. M. ;
Ho, H. P. ;
Kong, S. K. .
TALANTA, 2013, 115 :159-165
[49]   A real-time microfluidic multiplex electrochemical loop-mediated isothermal amplification chip for differentiating bacteria [J].
Luo, Juan ;
Fang, Xueen ;
Ye, Daixing ;
Li, Huixiang ;
Chen, Hui ;
Zhang, Song ;
Kong, Jilie .
BIOSENSORS & BIOELECTRONICS, 2014, 60 :84-91
[50]   Microfluidic lab-on-a-foil for nucleic acid analysis based on isothermal recombinase polymerase amplification (RPA) [J].
Lutz, Sascha ;
Weber, Patrick ;
Focke, Max ;
Faltin, Bernd ;
Hoffmann, Jochen ;
Mueller, Claas ;
Mark, Daniel ;
Roth, Guenter ;
Munday, Peter ;
Armes, Niall ;
Piepenburg, Olaf ;
Zengerle, Roland ;
von Stetten, Felix .
LAB ON A CHIP, 2010, 10 (07) :887-893