Integration of isothermal amplification methods in microfluidic devices: Recent advances

被引:131
作者
Giuffrida, Maria Chiara [1 ]
Spoto, Giuseppe [1 ,2 ]
机构
[1] Univ Catania, Dipartimento Sci Chim, Consorzio Interuniv Ist Nazl Biostrutture & Biosi, Viale Andrea Doria 6, Catania, Italy
[2] Univ Catania, Dipartimento Sci Chim, Viale Andrea Doria 6, I-95125 Catania, Italy
关键词
Microfluidics; Isothermal amplification; DNA; PCR; MicroRNA; RECOMBINASE POLYMERASE AMPLIFICATION; ROLLING CIRCLE AMPLIFICATION; NUCLEIC-ACID AMPLIFICATION; STRAND-DISPLACEMENT POLYMERIZATION; CHAIN-REACTION; MESSENGER-RNA; ABSOLUTE QUANTIFICATION; FLUORESCENCE DETECTION; DNA; ASSAY;
D O I
10.1016/j.bios.2016.11.045
中图分类号
Q6 [生物物理学];
学科分类号
071011 ;
摘要
The integration of nucleic acids detection assays in microfluidic devices represents a highly promising approach for the development of convenient, cheap and efficient diagnostic tools for clinical, food safety and environmental monitoring applications. Such tools are expected to operate at the point-of-care and in resource-limited settings. The amplification of the target nucleic acid sequence represents a key step for the development of sensitive detection protocols. The integration in microfluidic devices of the most popular technology for nucleic acids amplifications, polymerase chain reaction (PCR), is significantly limited by the thermal cycling needed to obtain the target sequence amplification. This review provides an overview of recent advances in integration of isothermal amplification methods in microfluidic devices. Isothermal methods, that operate at constant temperature, have emerged as promising alternative to PCR and greatly simplify the implementation of amplification methods in point-of-care diagnostic devices and devices to be used in resource-limited settings. Possibilities offered by isothermal methods for digital droplet amplification are discussed.
引用
收藏
页码:174 / 186
页数:13
相关论文
共 99 条
[1]   Rolling circle amplification: a versatile tool for chemical biology, materials science and medicine [J].
Ali, M. Monsur ;
Li, Feng ;
Zhang, Zhiqing ;
Zhang, Kaixiang ;
Kang, Dong-Ku ;
Ankrum, James A. ;
Le, X. Chris ;
Zhao, Weian .
CHEMICAL SOCIETY REVIEWS, 2014, 43 (10) :3324-3341
[2]   Miniaturized isothermal nucleic acid amplification, a review [J].
Asiello, Peter J. ;
Baeumner, Antje J. .
LAB ON A CHIP, 2011, 11 (08) :1420-1430
[3]   Signal amplification of padlock probes by rolling circle replication [J].
Banér, J ;
Nilsson, M ;
Mendel-Hartvig, M ;
Landegren, U .
NUCLEIC ACIDS RESEARCH, 1998, 26 (22) :5073-5078
[4]   Physics and applications of microfluidics in biology [J].
Beebe, DJ ;
Mensing, GA ;
Walker, GM .
ANNUAL REVIEW OF BIOMEDICAL ENGINEERING, 2002, 4 :261-286
[5]   Biosensors for liquid biopsy: circulating nucleic acids to diagnose and treat cancer [J].
Bellassai, Noemi ;
Spoto, Giuseppe .
ANALYTICAL AND BIOANALYTICAL CHEMISTRY, 2016, 408 (26) :7255-7264
[6]   Detection of unamplified genomic DNA by a PNA-based microstructured optical fiber (MOF) Bragg-grating optofluidic system [J].
Bertucci, Alessandro ;
Manicardi, Alex ;
Candiani, Alessandro ;
Giannetti, Sara ;
Cucinotta, Annamaria ;
Spoto, Giuseppe ;
Konstantaki, Maria ;
Pissadakis, Stavros ;
Selleri, Stefano ;
Corradini, Roberto .
BIOSENSORS & BIOELECTRONICS, 2015, 63 :248-254
[7]   Studying enzymatic bioreactions in a millisecond microfluidic flow mixer [J].
Buchegger, Wolfgang ;
Haller, Anna ;
van den Driesche, Sander ;
Kraft, Martin ;
Lendl, Bernhard ;
Vellekoop, Michael .
BIOMICROFLUIDICS, 2012, 6 (01)
[8]   A highly uniform lamination micromixer with wedge shaped inlet channels for time resolved infrared spectroscopy [J].
Buchegger, Wolfgang ;
Wagner, Christoph ;
Lendl, Bernhard ;
Kraft, Martin ;
Vellekoop, Michael J. .
MICROFLUIDICS AND NANOFLUIDICS, 2011, 10 (04) :889-897
[9]   Diagnostic Devices for Isothermal Nucleic Acid Amplification [J].
Chang, Chia-Chen ;
Chen, Chien-Cheng ;
Wei, Shih-Chung ;
Lu, Hui-Hsin ;
Liang, Yang-Hung ;
Lin, Chii-Wann .
SENSORS, 2012, 12 (06) :8319-8337
[10]   Stacking nonenzymatic circuits for high signal gain [J].
Chen, Xi ;
Briggs, Neima ;
McLain, Jeremy R. ;
Ellington, Andrew D. .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2013, 110 (14) :5386-5391