Transmission electron microscopy as a tool for nanocrystal characterization pre- and post-injector

被引:16
作者
Stevenson, H. P. [1 ]
DePonte, D. P. [2 ]
Makhov, A. M. [1 ]
Conway, James F. [1 ]
Zeldin, O. B. [4 ,5 ]
Boutet, S. [2 ]
Calero, G. [1 ]
Cohen, A. E. [3 ]
机构
[1] Univ Pittsburgh Sch Med, Dept Struct Biol, Pittsburgh, PA 15260 USA
[2] Stanford Univ, Linac Coherent Light Source, SLAC Natl Accelerator Lab, Menlo Pk, CA 94025 USA
[3] Stanford Univ, Stanford Synchrotron Radiat Lightsource, SLAC Natl Accelerator Lab, Menlo Pk, CA 94025 USA
[4] Stanford Univ, Dept Struct Biol, Stanford, CA 94305 USA
[5] Stanford Univ, Howard Hughes Med Inst, Stanford, CA 94305 USA
基金
美国国家卫生研究院;
关键词
femtosecond diffraction; crystallography; crystal injector; sample delivery; transmission electron microscopy (TEM); crystal characterization; SERIAL FEMTOSECOND CRYSTALLOGRAPHY; PROTEIN NANOCRYSTALLOGRAPHY; DIFFRACTION; LASER;
D O I
10.1098/rstb.2013.0322
中图分类号
Q [生物科学];
学科分类号
07 ; 0710 ; 09 ;
摘要
Recent advancements at the Linac Coherent Light Source X-ray free-electron laser (XFEL) enabling successful serial femtosecond diffraction experiments using nanometre-sized crystals (NCs) have opened up the possibility of X-ray structure determination of proteins that produce only submicrometre crystals such as many membrane proteins. Careful crystal pre-characterization including compatibility testing of the sample delivery method is essential to ensure efficient use of the limited beamtime available at XFEL sources. This work demonstrates the utility of transmission electron microscopy for detecting and evaluating NCs within the carrier solutions of liquid injectors. The diffraction quality of these crystals may be assessed by examining the crystal lattice and by calculating the fast Fourier transform of the image. Injector reservoir solutions, as well as solutions collected post-injection, were evaluated for three types of protein NCs (i) the membrane protein PTHR1, (ii) the multi-protein complex Pol II-GFP and (iii) the soluble protein lysozyme. Our results indicate that the concentration and diffraction quality of NCs, particularly those with high solvent content and sensitivity to mechanical manipulation may be affected by the delivery process.
引用
收藏
页数:5
相关论文
共 21 条
[1]   Time-resolved protein nanocrystallography using an X-ray free-electron laser [J].
Aquila, Andrew ;
Hunter, Mark S. ;
Doak, R. Bruce ;
Kirian, Richard A. ;
Fromme, Petra ;
White, Thomas A. ;
Andreasson, Jakob ;
Arnlund, David ;
Bajt, Sasa ;
Barends, Thomas R. M. ;
Barthelmess, Miriam ;
Bogan, Michael J. ;
Bostedt, Christoph ;
Bottin, Herve ;
Bozek, John D. ;
Caleman, Carl ;
Coppola, Nicola ;
Davidsson, Jan ;
DePonte, Daniel P. ;
Elser, Veit ;
Epp, Sascha W. ;
Erk, Benjamin ;
Fleckenstein, Holger ;
Foucar, Lutz ;
Frank, Matthias ;
Fromme, Raimund ;
Graafsma, Heinz ;
Grotjohann, Ingo ;
Gumprecht, Lars ;
Hajdu, Janos ;
Hampton, Christina Y. ;
Hartmann, Andreas ;
Hartmann, Robert ;
Hauriege, Stefan ;
Hauser, Guenter ;
Hirsemann, Helmut ;
Holl, Peter ;
Holton, James M. ;
Hoemke, Andre ;
Johansson, Linda ;
Kimmel, Nils ;
Kassemeyer, Stephan ;
Krasniqi, Faton ;
Kuehnel, Kaiuwe ;
Liang, Mengning ;
Lomb, Lukas ;
Malmerberg, Erik ;
Marchesini, Stefano ;
Martin, Andrew V. ;
Maia, Filipe R. N. C. .
OPTICS EXPRESS, 2012, 20 (03) :2706-2716
[2]  
Barty A, 2012, NAT PHOTONICS, V6, P35, DOI [10.1038/NPHOTON.2011.297, 10.1038/nphoton.2011.297]
[3]   High-Resolution Protein Structure Determination by Serial Femtosecond Crystallography [J].
Boutet, Sebastien ;
Lomb, Lukas ;
Williams, Garth J. ;
Barends, Thomas R. M. ;
Aquila, Andrew ;
Doak, R. Bruce ;
Weierstall, Uwe ;
DePonte, Daniel P. ;
Steinbrener, Jan ;
Shoeman, Robert L. ;
Messerschmidt, Marc ;
Barty, Anton ;
White, Thomas A. ;
Kassemeyer, Stephan ;
Kirian, Richard A. ;
Seibert, M. Marvin ;
Montanez, Paul A. ;
Kenney, Chris ;
Herbst, Ryan ;
Hart, Philip ;
Pines, Jack ;
Haller, Gunther ;
Gruner, Sol M. ;
Philipp, Hugh T. ;
Tate, Mark W. ;
Hromalik, Marianne ;
Koerner, Lucas J. ;
van Bakel, Niels ;
Morse, John ;
Ghonsalves, Wilfred ;
Arnlund, David ;
Bogan, Michael J. ;
Caleman, Carl ;
Fromme, Raimund ;
Hampton, Christina Y. ;
Hunter, Mark S. ;
Johansson, Linda C. ;
Katona, Gergely ;
Kupitz, Christopher ;
Liang, Mengning ;
Martin, Andrew V. ;
Nass, Karol ;
Redecke, Lars ;
Stellato, Francesco ;
Timneanu, Nicusor ;
Wang, Dingjie ;
Zatsepin, Nadia A. ;
Schafer, Donald ;
Defever, James ;
Neutze, Richard .
SCIENCE, 2012, 337 (6092) :362-364
[4]   The Coherent X-ray Imaging (CXI) instrument at the Linac Coherent Light Source (LCLS) [J].
Boutet, Sebastien ;
Williams, Garth J. .
NEW JOURNAL OF PHYSICS, 2010, 12
[5]   Femtosecond X-ray protein nanocrystallography [J].
Chapman, Henry N. ;
Fromme, Petra ;
Barty, Anton ;
White, Thomas A. ;
Kirian, Richard A. ;
Aquila, Andrew ;
Hunter, Mark S. ;
Schulz, Joachim ;
DePonte, Daniel P. ;
Weierstall, Uwe ;
Doak, R. Bruce ;
Maia, Filipe R. N. C. ;
Martin, Andrew V. ;
Schlichting, Ilme ;
Lomb, Lukas ;
Coppola, Nicola ;
Shoeman, Robert L. ;
Epp, Sascha W. ;
Hartmann, Robert ;
Rolles, Daniel ;
Rudenko, Artem ;
Foucar, Lutz ;
Kimmel, Nils ;
Weidenspointner, Georg ;
Holl, Peter ;
Liang, Mengning ;
Barthelmess, Miriam ;
Caleman, Carl ;
Boutet, Sebastien ;
Bogan, Michael J. ;
Krzywinski, Jacek ;
Bostedt, Christoph ;
Bajt, Sasa ;
Gumprecht, Lars ;
Rudek, Benedikt ;
Erk, Benjamin ;
Schmidt, Carlo ;
Hoemke, Andre ;
Reich, Christian ;
Pietschner, Daniel ;
Strueder, Lothar ;
Hauser, Guenter ;
Gorke, Hubert ;
Ullrich, Joachim ;
Herrmann, Sven ;
Schaller, Gerhard ;
Schopper, Florian ;
Soltau, Heike ;
Kuehnel, Kai-Uwe ;
Messerschmidt, Marc .
NATURE, 2011, 470 (7332) :73-U81
[6]   Gas dynamic virtual nozzle for generation of microscopic droplet streams [J].
DePonte, D. P. ;
Weierstall, U. ;
Schmidt, K. ;
Warner, J. ;
Starodub, D. ;
Spence, J. C. H. ;
Doak, R. B. .
JOURNAL OF PHYSICS D-APPLIED PHYSICS, 2008, 41 (19)
[7]   SEM imaging of liquid jets [J].
DePonte, Daniel P. ;
Doak, R. B. ;
Hunter, Mark ;
Liu, Zhenquan ;
Weierstall, U. ;
Spence, John C. H. .
MICRON, 2009, 40 (04) :507-509
[8]   Cloning, expression and two-step purification of recombinant His-tag enhanced green fluorescent protein over-expressed in Escherichia coli [J].
Dieryck, W ;
Noubhani, AM ;
Coulon, D ;
Santarelli, X .
JOURNAL OF CHROMATOGRAPHY B-ANALYTICAL TECHNOLOGIES IN THE BIOMEDICAL AND LIFE SCIENCES, 2003, 786 (1-2) :153-159
[9]  
Hart P, 2012, CSPAD MEGAPIXEL XRAY, V8504
[10]   Toward structure determination using membrane-protein nanocrystals and microcrystals [J].
Hunter, Mark S. ;
Fromme, Petra .
METHODS, 2011, 55 (04) :387-404