Machine Learning Techniques for Chemical Identification Using Cyclic Square Wave Voltammetry

被引:37
作者
Dean, Scott N.
Shriver-Lake, Lisa C. [1 ]
Stenger, David A. [1 ]
Erickson, Jeffrey S. [1 ]
Golden, Joel P. [1 ]
Trammell, Scott A. [1 ]
机构
[1] US Naval Res Lab, Ctr Bio Mol Sci & Engn Code 6900, 4555 Overlook Ave SW, Washington, DC 20375 USA
关键词
electrochemical detection; cyclic square wave voltammetry; machine learning techniques; BLACK TEAS; GREEN;
D O I
10.3390/s19102392
中图分类号
O65 [分析化学];
学科分类号
070302 ; 081704 ;
摘要
Electroanalytical techniques are useful for detection and identification because the instrumentation is simple and can support a wide variety of assays. One example is cyclic square wave voltammetry (CSWV), a practical detection technique for different classes of compounds including explosives, herbicides/pesticides, industrial compounds, and heavy metals. A key barrier to the widespread application of CSWV for chemical identification is the necessity of a high performance, generalizable classification algorithm. Here, machine and deep learning models were developed for classifying samples based on voltammograms alone. The highest performing models were Long Short-Term Memory (LSTM) and Fully Convolutional Networks (FCNs), depending on the dataset against which performance was assessed. When compared to other algorithms, previously used for classification of CSWV and other similar data, our LSTM and FCN-based neural networks achieve higher sensitivity and specificity with the area under the curve values from receiver operating characteristic (ROC) analyses greater than 0.99 for several datasets. Class activation maps were paired with CSWV scans to assist in understanding the decision-making process of the networks, and their ability to utilize this information was examined. The best-performing models were then successfully applied to new or holdout experimental data. An automated method for processing CSWV data, training machine learning models, and evaluating their prediction performance is described, and the tools generated provide support for the identification of compounds using CSWV from samples in the field.
引用
收藏
页数:15
相关论文
共 24 条
  • [1] Abadi M., 2015, P 12 USENIX S OPERAT
  • [2] [Anonymous], 2018, ARXIV180512323
  • [3] Simultaneous identification and quantification of nitro-containing explosives by advanced chemometric data treatment of cyclic voltammetry at screen-printed electrodes
    Ceto, Xavier
    O' Mahony, Aoife M.
    Wang, Joseph
    del Valle, Manel
    [J]. TALANTA, 2013, 107 : 270 - 276
  • [4] A Simple and Inexpensive Electrochemical Assay for the Identification of Nitrogen Containing Explosives in the Field
    Erickson, Jeffrey S.
    Shriver-Lake, Lisa C.
    Zabetakis, Daniel
    Stenger, David A.
    Trammell, Scott A.
    [J]. SENSORS, 2017, 17 (08):
  • [5] Learning precise timing with LSTM recurrent networks
    Gers, FA
    Schraudolph, NN
    Schmidhuber, J
    [J]. JOURNAL OF MACHINE LEARNING RESEARCH, 2003, 3 (01) : 115 - 143
  • [6] Electrochemical biosensors -: Sensor principles and architectures
    Grieshaber, Dorothee
    MacKenzie, Robert
    Voeroes, Janos
    Reimhult, Erik
    [J]. SENSORS, 2008, 8 (03) : 1400 - 1458
  • [7] A convolutional neural network to filter artifacts in spectroscopic MRI
    Gurbani, Saumya S.
    Schreibmann, Eduard
    Maudsley, Andrew A.
    Cordova, James Scott
    Soher, Brian J.
    Poptani, Harish
    Verma, Gaurav
    Barker, Peter B.
    Shim, Hyunsuk
    Cooper, Lee A. D.
    [J]. MAGNETIC RESONANCE IN MEDICINE, 2018, 80 (05) : 1765 - 1775
  • [8] Cyclic Square Wave Voltammetry of Single and Consecutive Reversible Electron Transfer Reactions
    Helfrick, John C., Jr.
    Bottomley, Lawrence A.
    [J]. ANALYTICAL CHEMISTRY, 2009, 81 (21) : 9041 - 9047
  • [9] LSTM Fully Convolutional Networks for Time Series Classification
    Karim, Fazle
    Majumdar, Somshubra
    Darabi, Houshang
    Chen, Shun
    [J]. IEEE ACCESS, 2018, 6 : 1662 - 1669
  • [10] Using dynamic time warping distances as features for improved time series classification
    Kate, Rohit J.
    [J]. DATA MINING AND KNOWLEDGE DISCOVERY, 2016, 30 (02) : 283 - 312