Fluctuating hydrogen-bond networks govern anomalous electron transfer kinetics in a blue copper protein

被引:37
作者
Kretchmer, Joshua S. [1 ]
Boekelheide, Nicholas [2 ]
Warren, Jeffrey J. [3 ]
Winkler, Jay R. [1 ]
Gray, Harry B. [1 ]
Miller, Thomas F., III [1 ]
机构
[1] CALTECH, Div Chem & Chem Engn, Pasadena, CA 91125 USA
[2] MIT, Dept Earth Atmospher & Planetary Sci, Cambridge, MA 02139 USA
[3] Simon Fraser Univ, Dept Chem, Burnaby, BC V5A 1S6, Canada
关键词
electron transfer; azurin; ring polymer molecular dynamics; Marcus theory; protein dynamics; PSEUDOMONAS-AERUGINOSA AZURIN; TRANSFER RATES; PHOTOSYSTEM-II; DYNAMICS; OXIDATION; SITE; METALLOPROTEINS; MUTAGENESIS; CHEMISTRY; LIGANDS;
D O I
10.1073/pnas.1805719115
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
We combine experimental and computational methods to address the anomalous kinetics of long-range electron transfer (ET) in mutants of Pseudomonas aeruginosa azurin. ET rates and driving forces for wild type (WT) and three N47X mutants (X = L, S, and D) of Ru(2,2'-bipyridine)(2) (imidazole)(His83) azurin are reported. An enhanced ET rate for the N47L mutant suggests either an increase of the donor-acceptor (DA) electronic coupling or a decrease in the reorganization energy for the reaction. The underlying atomistic features are investigated using a recently developed nonadiabatic molecular dynamics method to simulate ET in each of the azurin mutants, revealing unexpected aspects of DA electronic coupling. In particular, WT azurin and all studied mutants exhibit more DA compression during ET (> 2 angstrom) than previously recognized. Moreover, it is found that DA compression involves an extended network of hydrogen bonds, the fluctuations of which gate the ET reaction, such that DA compression is facilitated by transiently rupturing hydrogen bonds. It is found that the N47L mutant intrinsically disrupts this hydrogen-bond network, enabling particularly facile DA compression. This work, which reveals the surprisingly fluctional nature of ET in azurin, suggests that hydrogen-bond networks can modulate the efficiency of long-range biological ET.
引用
收藏
页码:6129 / 6134
页数:6
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