A new coarse-grained force field is developed for polyethylene glycol (PEG) in water. The force field is based on the MARTINI model but with the big multipole water (BMW) model for the solvent. The polymer force field is reparameterized using the MARTINI protocol. The new force field removes the ring-like conformations seen in simulations of short chains with the MARTINI force field; these conformations are not observed in atomistic simulations. We also investigate the effect of using parameters for the end-group that are different from those for the repeat units, with the MARTINI and BMW/MARTINI models. We find that the new BMW/MARTINI force field removes the ring-like conformations seen in the MARTINI models and has more accurate predictions for the density of neat PEG. However, solvent-separated-pairs between chain ends and slow dynamics of the PEG reflect its own artifacts. We also carry out fine-grained simulations of PEG with bundled water clusters and show that the water bundling can lead to ring-like conformations of the polymer molecules. The simulations emphasize the pitfalls of coarse-graining several molecules into one site and suggest that polymer solvent systems might be a stringent test for coarse-grained force fields.
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Johns Hopkins Univ, Dept Chem & Biomol Engn, Baltimore, MD USAUniv Calif Davis, Dept Chem Engn & Mat Sci, Davis, CA 95616 USA
Bennun, Sandra V.
Hoopes, Matthew I.
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Univ Calif Davis, Grad Grp Biophys, Davis, CA 95616 USAUniv Calif Davis, Dept Chem Engn & Mat Sci, Davis, CA 95616 USA
Hoopes, Matthew I.
Xing, Chenyue
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Univ Calif Davis, Dept Chem Engn & Mat Sci, Davis, CA 95616 USAUniv Calif Davis, Dept Chem Engn & Mat Sci, Davis, CA 95616 USA
Xing, Chenyue
Faller, Roland
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Univ Calif Davis, Dept Chem Engn & Mat Sci, Davis, CA 95616 USA
Univ Calif Davis, Grad Grp Biophys, Davis, CA 95616 USAUniv Calif Davis, Dept Chem Engn & Mat Sci, Davis, CA 95616 USA
机构:
Cornell Univ, Baker Lab Chem, Ithaca, NY 14850 USA
Univ Warmia & Mazury, Fac Food Sci, Dept Phys & Biophys, PL-11041 Olsztyn, PolandCornell Univ, Baker Lab Chem, Ithaca, NY 14850 USA
Maciejczyk, Maciej
Spasic, Aleksandar
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Cornell Univ, Baker Lab Chem, Ithaca, NY 14850 USA
Univ Rochester, Dept Biochem & Biophys, Med Ctr, Rochester, NY 14642 USACornell Univ, Baker Lab Chem, Ithaca, NY 14850 USA
Spasic, Aleksandar
Liwo, Adam
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Cornell Univ, Baker Lab Chem, Ithaca, NY 14850 USA
Univ Gdansk, Fac Chem, PL-80308 Gdansk, PolandCornell Univ, Baker Lab Chem, Ithaca, NY 14850 USA
Liwo, Adam
Scheraga, Harold A.
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Cornell Univ, Baker Lab Chem, Ithaca, NY 14850 USACornell Univ, Baker Lab Chem, Ithaca, NY 14850 USA
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Univ Chicago, Chicago Ctr Theoret Chem, Inst Biophys Dynam, Dept Chem, Chicago, IL 60637 USA
Univ Chicago, James Franck Inst, Chicago, IL 60637 USA
Columbia Univ, Dept Chem, New York, NY 10027 USAUniv Chicago, Chicago Ctr Theoret Chem, Inst Biophys Dynam, Dept Chem, Chicago, IL 60637 USA
Jin, Jaehyeok
Voth, Gregory A.
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Univ Chicago, Chicago Ctr Theoret Chem, Inst Biophys Dynam, Dept Chem, Chicago, IL 60637 USA
Univ Chicago, James Franck Inst, Chicago, IL 60637 USAUniv Chicago, Chicago Ctr Theoret Chem, Inst Biophys Dynam, Dept Chem, Chicago, IL 60637 USA
机构:
Johns Hopkins Univ, Dept Chem & Biomol Engn, Baltimore, MD USAUniv Calif Davis, Dept Chem Engn & Mat Sci, Davis, CA 95616 USA
Bennun, Sandra V.
Hoopes, Matthew I.
论文数: 0引用数: 0
h-index: 0
机构:
Univ Calif Davis, Grad Grp Biophys, Davis, CA 95616 USAUniv Calif Davis, Dept Chem Engn & Mat Sci, Davis, CA 95616 USA
Hoopes, Matthew I.
Xing, Chenyue
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h-index: 0
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Univ Calif Davis, Dept Chem Engn & Mat Sci, Davis, CA 95616 USAUniv Calif Davis, Dept Chem Engn & Mat Sci, Davis, CA 95616 USA
Xing, Chenyue
Faller, Roland
论文数: 0引用数: 0
h-index: 0
机构:
Univ Calif Davis, Dept Chem Engn & Mat Sci, Davis, CA 95616 USA
Univ Calif Davis, Grad Grp Biophys, Davis, CA 95616 USAUniv Calif Davis, Dept Chem Engn & Mat Sci, Davis, CA 95616 USA
机构:
Cornell Univ, Baker Lab Chem, Ithaca, NY 14850 USA
Univ Warmia & Mazury, Fac Food Sci, Dept Phys & Biophys, PL-11041 Olsztyn, PolandCornell Univ, Baker Lab Chem, Ithaca, NY 14850 USA
Maciejczyk, Maciej
Spasic, Aleksandar
论文数: 0引用数: 0
h-index: 0
机构:
Cornell Univ, Baker Lab Chem, Ithaca, NY 14850 USA
Univ Rochester, Dept Biochem & Biophys, Med Ctr, Rochester, NY 14642 USACornell Univ, Baker Lab Chem, Ithaca, NY 14850 USA
Spasic, Aleksandar
Liwo, Adam
论文数: 0引用数: 0
h-index: 0
机构:
Cornell Univ, Baker Lab Chem, Ithaca, NY 14850 USA
Univ Gdansk, Fac Chem, PL-80308 Gdansk, PolandCornell Univ, Baker Lab Chem, Ithaca, NY 14850 USA
Liwo, Adam
Scheraga, Harold A.
论文数: 0引用数: 0
h-index: 0
机构:
Cornell Univ, Baker Lab Chem, Ithaca, NY 14850 USACornell Univ, Baker Lab Chem, Ithaca, NY 14850 USA
机构:
Univ Chicago, Chicago Ctr Theoret Chem, Inst Biophys Dynam, Dept Chem, Chicago, IL 60637 USA
Univ Chicago, James Franck Inst, Chicago, IL 60637 USA
Columbia Univ, Dept Chem, New York, NY 10027 USAUniv Chicago, Chicago Ctr Theoret Chem, Inst Biophys Dynam, Dept Chem, Chicago, IL 60637 USA
Jin, Jaehyeok
Voth, Gregory A.
论文数: 0引用数: 0
h-index: 0
机构:
Univ Chicago, Chicago Ctr Theoret Chem, Inst Biophys Dynam, Dept Chem, Chicago, IL 60637 USA
Univ Chicago, James Franck Inst, Chicago, IL 60637 USAUniv Chicago, Chicago Ctr Theoret Chem, Inst Biophys Dynam, Dept Chem, Chicago, IL 60637 USA