Complete mitochondrial DNA sequence of the three-keeled pond turtle Mauremys reevesii (Reptilia: Testudines)

被引：4

作者：

Asami, Mari ^{[1
]}

Okuyama, Hisashi ^{[1
]}

Takahashi, Jun-ichi ^{[1
]}

机构：

[1] Kyoto Sangyo Univ, Fac Life Sci, Kyoto 6038555, Japan

来源：

MITOCHONDRIAL DNA PART B-RESOURCES | 2019年 / 4卷 / 01期

关键词：

Three-keeled pond turtle; Reeve's pond turtle; alien species; next-generation sequencing; extra base; GENOME; HYBRIDIZATION; JAPONICA;

D O I：

10.1080/23802359.2019.1601511

中图分类号：

Q3 [遗传学];

学科分类号：

071007 ; 090102 ;

摘要：

The complete mitochondrial genome of the three-keeled pond turtle Mauremys reevesii from Japan was analyzed using next-generation sequencing. The mitochondrial genome of M. reevesii was observed to be a circular molecule of 15,528 bp containing 13 protein-coding genes, 22 tRNA genes, and two rRNA genes, along with one A + T-rich control region. The average AT was found to be 61.11%. One extra base was present at the 174th position in the ND3 gene. Molecular phylogenetic analysis revealed that M. reevesii from Japan was few genetically distant from the geographically isolated M. reevesii from South Korea. This turtle might have been exported to Japan from the Korean Peninsula after the Middle Ages.

引用

页码：1520 / 1521

页数：2

共 18 条

[1] MITOS: Improved de novo metazoan mitochondrial genome annotation [J].

Bernt, Matthias ;

Donath, Alexander ;

Juehling, Frank ;

Externbrink, Fabian ;

Florentz, Catherine ;

Fritzsch, Guido ;

Puetz, Joern ;

Middendorf, Martin ;

Stadler, Peter F. .

MOLECULAR PHYLOGENETICS AND EVOLUTION, 2013, 69 (02) :313-319

[2] The complete mitochondrial genome of the Burmese roofed turtle (Batagur trivittata) (Testudines: Geoemydidae) [J].

Feng, Li ;

Yang, Jiao ;

Zhang, Yan-Ping ;

Zhao, Gui-Fang .

CONSERVATION GENETICS RESOURCES, 2017, 9 (01) :95-97

[3] DNA evidence for the hybridization of wild turtles in Taiwan: possible genetic pollution from trade animals [J].

Fong, Jonathan J. ;

Chen, Tien-Hsi .

CONSERVATION GENETICS, 2010, 11 (05) :2061-2066

[4] A large phylogeny of turtles (Testudines) using molecular data [J].

Guillon, Jean-Michel ;

Guery, Lorelei ;

Hulin, Vincent ;

Girondot, Marc .

CONTRIBUTIONS TO ZOOLOGY, 2012, 81 (03) :147-158

[5] Phylogenetic relationships of the Asian box turtles of the genus Cuora sensu lato (Reptilia: Bataguridae) inferred from mitochondrial DNA sequences [J].

Honda, M ;

Yasukawa, Y ;

Hirayama, R ;

Ota, H .

ZOOLOGICAL SCIENCE, 2002, 19 (11) :1305-1312

[6]

Jobb G., 2011, TREEFINDER version of March 2011

[7] Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data [J].

Kearse, Matthew ;

Moir, Richard ;

Wilson, Amy ;

Stones-Havas, Steven ;

Cheung, Matthew ;

Sturrock, Shane ;

Buxton, Simon ;

Cooper, Alex ;

Markowitz, Sidney ;

Duran, Chris ;

Thierer, Tobias ;

Ashton, Bruce ;

Meintjes, Peter ;

Drummond, Alexei .

BIOINFORMATICS, 2012, 28 (12) :1647-1649

[8] Complete mitochondrial genome of the Cyclemys pulchristriata (Chelonia: Geoemydidae) [J].

Li, Jun ;

Lu, Yuanhua ;

Zan, Jiawei ;

Nie, Liuwang .

MITOCHONDRIAL DNA PART B-RESOURCES, 2017, 2 (02) :403-404

[9] GEOGRAPHIC-VARIATION IN THE ASIATIC TURTLE CHINEMYS-REEVESII (GRAY) AND THE STATUS OF GEOCLEMYS-GRANGERI SCHMIDT [J].

LOVICH, JE ;

ERNST, CH ;

GOTTE, SW .

JOURNAL OF HERPETOLOGY, 1985, 19 (02) :238-245

[10] An extra nucleotide is not translated in mitochondrial ND3 of some birds and turtles [J].

Mindell, DP ;

Sorenson, MD ;

Dimcheff, DE .

MOLECULAR BIOLOGY AND EVOLUTION, 1998, 15 (11) :1568-1571

← 1 2 →