The effect of artificial defaunation on bacterial assemblages of intertidal sediments

The use of the artificial defaunation of sediments is widespread among studies examining the disturbance and recovery of benthic macrofaunal communities. Standard methods of defaunation include driving the sediment to anoxia, freezing and sieving. In this study we performed a field experiment to test the assumption that the bacterial assemblages are unaffected by these methods of defaunation. Same-sized patches of sediment were defaunated by covering sediment with plastic sheeting (weighted by concrete blocks), freezing or sieving (1-mm mesh). Macrofaunal counts of sediment cores, taken to determine the effectiveness of each defaunation method, indicated that although none of the treatments removed 100% of macrofauna, all resulted in reduced macrofaunal presence, with the sieved treatment being the most effective. Bacterial samples were taken over the course of a month to determine both the initial and long-term effects of defaunation on bacterial community structure. Numerical effects were determined via epifluorescence microscopy, whereas differences in community composition were followed using PCR and denaturing gradient gel electrophoresis (DGGE). The anoxic treatments resulted in significant numerical changes in both active and total cell counts over time, while the frozen and sieved treatments caused less apparent changes. All of the treatments initially changed the composition of the community; however, anoxic and sieved treatments resulted in subtle changes while the frozen treatment produced more notable and variable changes within the community. The composition of the bacterial community in all of the treatment plots trended towards recovery, or convergence towards that of ambient sediments, by the t = 25-day sampling period. (c) 2006 Elsevier B.V. All rights reserved.