Significance of p53 dynamics in regulating apoptosis in response to ionizing radiation, and polypharmacological strategies

被引:35
作者
Liu, Bing [1 ]
Bhatt, Divesh [1 ]
Oltvai, Zoltan N. [1 ,2 ]
Greenberger, Joel S. [3 ]
Bahar, Ivet [1 ]
机构
[1] Univ Pittsburgh, Sch Med, Dept Computat & Syst Biol, Pittsburgh, PA 15260 USA
[2] Univ Pittsburgh, Sch Med, Dept Pathol, Pittsburgh, PA USA
[3] Univ Pittsburgh, Sch Med, Dept Radiat Oncol, Pittsburgh, PA USA
来源
SCIENTIFIC REPORTS | 2014年 / 4卷
关键词
FEEDBACK LOOP; CELL-DEATH; BAX; ACTIVATION; BCL-2; MITOCHONDRIA; PUMA; INHIBITOR; NUCLEAR; CASPASE-3;
D O I
10.1038/srep06245
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Developing pharmacological strategies for controlling ionizing radiation (IR)-induced cell death is important for both mitigating radiation damage and alleviating the side effects of anti-cancer radiotherapy manifested in surrounding tissue morbidity. Exposure to IR often triggers the onset of p53-dependent apoptotic pathways. Here we build a stochastic model of p53 induced apoptosis comprised of coupled modules of nuclear p53 activation, mitochondrial cytochrome c release and cytosolic caspase activation that also takes into account cellular heterogeneity. Our simulations show that the strength of p53 transcriptional activity and its coupling (or timing with respect) to mitochondrial pore opening are major determinants of cell fate: for systems where apoptosis is elicited via a p53-transcription-independent mechanism, direct activation of Bax by p53 becomes critical to IR-induced-damage initiation. We further show that immediate administration of PUMA inhibitors following IR exposure effectively suppresses excessive cell death, provided that there is a strong caspase/Bid feedback loop; however, the efficacy of the treatment diminishes with increasing delay in treatment implementation. In contrast, the combined inhibition of Bid and Bax elicits an anti-apoptotic response that is effective over a range of time delays.
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页数:12
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共 61 条
  • [1] Three-dimensional structure of the apoptosome: Implications for assembly, procaspase-9 binding, and activation
    Acehan, D
    Jiang, XJ
    Morgan, DG
    Heuser, JE
    Wang, XD
    Akey, CW
    [J]. MOLECULAR CELL, 2002, 9 (02) : 423 - 432
  • [2] Modeling a Snap-Action, Variable-Delay Switch Controlling Extrinsic Cell Death
    Albeck, John G.
    Burke, John M.
    Spencer, Sabrina L.
    Lauffenburger, Douglas A.
    Sorger, Peter K.
    [J]. PLOS BIOLOGY, 2008, 6 (12) : 2831 - 2852
  • [3] A mitochondria-targeted inhibitor of cytochrome c peroxidase mitigates radiation-induced death
    Atkinson, Jeffrey
    Kapralov, Alexandr A.
    Yanamala, Naveena
    Tyurina, Yulia Y.
    Amoscato, Andrew A.
    Pearce, Linda
    Peterson, Jim
    Huang, Zhentai
    Jiang, Jianfei
    Samhan-Arias, Alejandro K.
    Maeda, Akihiro
    Feng, Weihong
    Wasserloos, Karla
    Belikova, Natalia A.
    Tyurin, Vladimir A.
    Wang, Hong
    Fletcher, Jackie
    Wang, Yongsheng
    Vlasova, Irina I.
    Klein-Seetharaman, Judith
    Stoyanovsky, Detcho A.
    Bayir, Huelya
    Pitt, Bruce R.
    Epperly, Michael W.
    Greenberger, Joel S.
    Kagan, Valerian E.
    [J]. NATURE COMMUNICATIONS, 2011, 2
  • [4] Bistability in apoptosis: Roles of Bax, Bcl-2, and mitochondrial permeability transition pores
    Bagci, EZ
    Vodovotz, Y
    Billiar, TR
    Ermentrout, GB
    Bahar, I
    [J]. BIOPHYSICAL JOURNAL, 2006, 90 (05) : 1546 - 1559
  • [5] DNA damage activates ATM through intermolecular autophosphorylation and dimer dissociation
    Bakkenist, CJ
    Kastan, MB
    [J]. NATURE, 2003, 421 (6922) : 499 - 506
  • [6] Generation of oscillations by the p53-Mdm2 feedback loop: A theoretical and experimental study
    Bar-Or, RL
    Maya, R
    Segel, LA
    Alon, U
    Levine, AJ
    Oren, M
    [J]. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2000, 97 (21) : 11250 - 11255
  • [7] Recurrent initiation: A mechanism for triggering p53 pulses in response to DNA damage
    Batchelor, Eric
    Mock, Caroline S.
    Bhan, Irun
    Loewer, Alexander
    Lahav, Galit
    [J]. MOLECULAR CELL, 2008, 30 (03) : 277 - 289
  • [8] Stimulus-dependent dynamics of p53 in single cells
    Batchelor, Eric
    Loewer, Alexander
    Mock, Caroline
    Lahav, Galit
    [J]. MOLECULAR SYSTEMS BIOLOGY, 2011, 7
  • [9] Targeting apoptosis via chemical design: Inhibition of bid-induced cell death by small organic molecules
    Becattini, B
    Sareth, S
    Zhai, DY
    Crowell, KJ
    Leone, M
    Reed, JC
    Pellecchia, M
    [J]. CHEMISTRY & BIOLOGY, 2004, 11 (08): : 1107 - 1117
  • [10] Simulating mesoscopic reaction-diffusion systems using the Gillespie algorithm
    Bernstein, D
    [J]. PHYSICAL REVIEW E, 2005, 71 (04):