USING SSR TO EVALUATE THE GENETIC DIVERSITY OF POTATO CULTIVARS FROM YUNNAN PROVINCE (SW CHINA)

被引:19
作者
Liao, Hong [1 ]
Guo, Huachun [1 ]
机构
[1] Yunnan Agr Univ, Tuber & Crop Res Inst, Kunming, Peoples R China
关键词
Solanum tuberosum L; SSR markers; genetic diversity; potato cultivars; SIMPLE SEQUENCE REPEATS; SOLANUM-TUBEROSUM L; MARKERS; IDENTIFICATION; MICROSATELLITES;
D O I
10.2478/abcsb-2014-0003
中图分类号
Q94 [植物学];
学科分类号
071001 ;
摘要
The genetic diversity of potato cultivars collected from Yunnan Province was evaluated using 24 pairs of SSR markers. SSR analysis of 24 pairs of primers showed varying degrees of polymorphism among the 85 cultivars: 297 of the 304 bands were polymorphic. The primers yielded between 5 (STM2028) and 19 (StI029) bands (mean 12). The ratio of polymorphic bands ranged from 83.33% to 100% (mean 97.75%). Polymorphism information content (PIC) varied from 69.31% to 93.67% (mean 86.47%). Genetic similarity ranged from 0.5987 to 0.7632, indicating relatively low genetic diversity in the potato cultivars from Yunnan Province. Cluster analysis by UPGMA and PCA clearly delineated the genetic relationships of all cultivars; 83 of the 85 cultivars could be discriminated by only two pairs of primers, STM0030 and STM1104. The high polymorphism and good resolution of the primers used in this study make them good tools for discriminating potato cultivars.
引用
收藏
页码:16 / 27
页数:12
相关论文
共 32 条
  • [1] Ai XingMei Ai XingMei, 2010, Molecular Plant Breeding, V8, P920
  • [2] BAMBERG J, 2011, AM J POTATO RES, V88, P29
  • [3] Genetic diversity of carrot (Daucus carota L.) cultivars revealed by analysis of SSR loci
    Baranski, Rafal
    Maksylewicz-Kaul, Anna
    Nothnagel, Thomas
    Cavagnaro, Pablo F.
    Simon, Philipp W.
    Grzebelus, Dariusz
    [J]. GENETIC RESOURCES AND CROP EVOLUTION, 2012, 59 (02) : 163 - 170
  • [4] MEASURES OF THE AMOUNT OF ECOLOGIC ASSOCIATION BETWEEN SPECIES
    DICE, LR
    [J]. ECOLOGY, 1945, 26 (03) : 297 - 302
  • [5] Mapping and characterization of new EST-derived microsatellites for potato (Solanum tuberosum L.)
    Feingold, S
    Lloyd, J
    Norero, N
    Bonierbale, M
    Lorenzen, J
    [J]. THEORETICAL AND APPLIED GENETICS, 2005, 111 (03) : 456 - 466
  • [6] Genetic analysis of the cultivated potato Solanum tuberosum L. Phureja Group using RAPDs and nuclear SSRs
    Ghislain, M.
    Andrade, D.
    Rodriguez, F.
    Hijmans, R. J.
    Spooner, D. M.
    [J]. THEORETICAL AND APPLIED GENETICS, 2006, 113 (08) : 1515 - 1527
  • [7] Selection of highly informative and user-friendly microsatellites (SSRs) for genotyping of cultivated potato
    Ghislain, M
    Spooner, DM
    Rodríguez, F
    Villamón, F
    Núñez, J
    Vásquez, C
    Waugh, R
    Bonierbale, M
    [J]. THEORETICAL AND APPLIED GENETICS, 2004, 108 (05) : 881 - 890
  • [8] Robust and highly informative microsatellite-based genetic identity kit for potato
    Ghislain, Marc
    Nunez, Jorge
    Herrera, Maria Rosario
    Pignataro, Jose
    Guzman, Frank
    Bonierbale, Merideth
    Spooner, David M.
    [J]. MOLECULAR BREEDING, 2009, 23 (03) : 377 - 388
  • [9] Characterization of Solanum tuberosum simple sequence repeats and application to potato cultivar identification
    Kawchuk, LM
    Lynch, DR
    Thomas, J
    Penner, B
    Sillito, D
    Kulcsar, F
    [J]. AMERICAN POTATO JOURNAL, 1996, 73 (08): : 325 - 335
  • [10] Li Fei Li Fei, 2010, Guizhou Agricultural Sciences, P9