Spatially augmented LPboosting for AD classification with evaluations on the ADNI dataset

被引:175
作者
Hinrichs, Chris [1 ,2 ]
Singh, Vikas [1 ,2 ]
Mukherjee, Lopamudra [3 ]
Xu, Guofan [4 ,5 ]
Chung, Moo K. [2 ]
Johnson, Sterling C. [4 ,5 ]
机构
[1] Univ Wisconsin, Dept Comp Sci, Madison, WI 53706 USA
[2] Univ Wisconsin, Dept Biostat & Med Informat, Madison, WI 53705 USA
[3] Univ Wisconsin, Dept Math & Comp Sci, Whitewater, WI 53190 USA
[4] Univ Wisconsin, Dept Med, Madison, WI 53792 USA
[5] William S Middleton Mem Vet Adm Med Ctr, Ctr Geriatr Res Educ & Clin, Madison, WI 53792 USA
关键词
DIMENSIONAL PATTERN-CLASSIFICATION; PRODROMAL ALZHEIMERS-DISEASE; FEATURE-SELECTION; BRAIN ATROPHY; DIAGNOSIS; ALGORITHM; PET;
D O I
10.1016/j.neuroimage.2009.05.056
中图分类号
Q189 [神经科学];
学科分类号
071006 ;
摘要
Structural and functional brain images are playing an important role in helping us understand the changes associated with neurological disorders such as Alzheimer's disease (AD). Recent efforts have now started investigating their utility for diagnosis purposes. This line of research has shown promising results where methods from machine learning (such as Support Vector Machines) have been used to identify AD-related patterns from images, for use in diagnosing new individual subjects. In this paper, we propose a new framework for AD classification which makes use of the Linear Program (LP) boosting with novel additional regularization based on spatial "smoothness" in 3D image coordinate spaces. The algorithm formalizes the expectation that since the examples for training the classifier are images, the voxels eventually selected for specifying the decision boundary must constitute spatially contiguous chunks, i.e., "regions" must be preferred over isolated voxels. This prior belief turns out to be useful for significantly reducing the space of possible classifiers and leads to substantial benefits in generalization. In our method, the requirement of spatial contiguity (of selected discriminating voxels) is incorporated within the optimization framework directly. Other methods have made use of similar biases as a pre- or post-processing step, however, our model incorporates this emphasis on spatial smoothness directly into the learning step. We report on extensive evaluations of our algorithm on MR and FDG-PET images from the Alzheimer's Disease Neuroimaging Initiative (ADNI) dataset, and discuss the relationship of the classification output with the clinical and cognitive biomarker data available within ADNI. (C) 2009 Elsevier Inc. All rights reserved.
引用
收藏
页码:138 / 149
页数:12
相关论文
共 46 条
  • [31] MITCHELL T, 1989, ANNU REV COMPUT SCI, V4, P417
  • [32] Mueller Susanne G, 2005, Alzheimers Dement, V1, P55, DOI 10.1016/j.jalz.2005.06.003
  • [33] Preclinical evidence of Alzheimer's disease in persons homozygous for the epsilon 4 allele for apolipoprotein E
    Reiman, EM
    Caselli, RJ
    Yun, LS
    Chen, KW
    Bandy, D
    Minoshima, S
    Thibodeau, SN
    Osborne, D
    [J]. NEW ENGLAND JOURNAL OF MEDICINE, 1996, 334 (12) : 752 - 758
  • [34] Middle-aged children of persons with Alzheimer's disease: APOE genotypes and cognitive function in the Wisconsin Registry for Alzheimer's Prevention
    Sager, MA
    Hermann, B
    La Rue, A
    [J]. JOURNAL OF GERIATRIC PSYCHIATRY AND NEUROLOGY, 2005, 18 (04) : 245 - 249
  • [35] Feature selection and classifier performance in computer-aided diagnosis: The effect of finite sample size
    Sahiner, B
    Chan, HP
    Petrick, N
    Wagner, RF
    Hadjiiski, L
    [J]. MEDICAL PHYSICS, 2000, 27 (07) : 1509 - 1522
  • [36] THE STRENGTH OF WEAK LEARNABILITY
    SCHAPIRE, RE
    [J]. MACHINE LEARNING, 1990, 5 (02) : 197 - 227
  • [37] Consistency of clinical diagnosis in a community-based longitudinal study of dementia and Alzheimer's disease
    Schofield, PW
    Tang, M
    Marder, K
    Bell, K
    Dooneief, G
    Lantigua, R
    Wilder, D
    Gurland, B
    Stern, Y
    Mayeux, R
    [J]. NEUROLOGY, 1995, 45 (12) : 2159 - 2164
  • [38] Hippocampal shape analysis: surface-based representation and classification
    Shen, L
    Ford, J
    Makedon, F
    Saykin, A
    [J]. MEDICAL IMAGING 2003: IMAGE PROCESSING, PTS 1-3, 2003, 5032 : 253 - 264
  • [39] Shock N. W., 1984, Normal Human Aging: The Baltimore Longitudinal Study of Aging
  • [40] Singh V, 2008, LECT NOTES COMPUT SC, V5241, P999, DOI 10.1007/978-3-540-85988-8_119