Long non-coding RNAs in colorectal cancer: implications for pathogenesis and clinical application

被引:102
作者
Xu, Mi-die [1 ,2 ,3 ]
Qi, Peng [1 ,2 ,3 ]
Du, Xiang [1 ,2 ,3 ,4 ]
机构
[1] Fudan Univ, Shanghai Canc Ctr, Dept Pathol, Shanghai 200032, Peoples R China
[2] Fudan Univ, Shanghai Med Coll, Dept Oncol, Shanghai 200032, Peoples R China
[3] Fudan Univ, Inst Pathol, Shanghai 200032, Peoples R China
[4] Fudan Univ, Inst Biomed Sci, Shanghai 200032, Peoples R China
关键词
colorectal cancer; diagnosis; dysregulation; long non-coding RNA; prognosis; POOR-PROGNOSIS; EXPRESSION; CARCINOMA; COLON; SUPPRESSOR; BIOMARKERS; HOTAIR; GENE; EPIGENETICS; GENOME;
D O I
10.1038/modpathol.2014.33
中图分类号
R36 [病理学];
学科分类号
100104 ;
摘要
Long non-coding RNAs (IncRNAs) are a class of newly identified non-coding RNA molecules that are emerging as key regulators of tumor initiation and development. Colorectal cancer (CRC) remains a major health problem worldwide, and there remains a need to further refine the current screening approaches as well as provide tailored diagnostic and therapeutic approaches. Multiple dysregulated IncRNAs participate in tumorigenesis through a variety of molecular mechanisms, and various regulatory factors frequently contribute to the aberrant expression of IncRNAs in CRC, thereby allowing malignant transformation. Additionally, the association of dysregulated IncRNAs with specific developmental stages and clinical outcomes indicates their potential as strong diagnostic and prognostic predictors as well as therapeutic targets. Here we provide a brief overview of the known functions of CRC-associated IncRNAs, describe some potential molecular mechanisms that underlie changes in IncRNA expression in CRC, and attempt to uncover their clinical and therapeutic potential.
引用
收藏
页码:1310 / 1320
页数:11
相关论文
共 108 条
[1]   Differential expression of colon cancer associated transcript1 (CCAT1) along the colonic adenoma-carcinoma sequence [J].
Alaiyan, Bilal ;
Ilyayev, Nadia ;
Stojadinovic, Alexander ;
Izadjoo, Mina ;
Roistacher, Marina ;
Pavlov, Vera ;
Tzivin, Victoria ;
Halle, David ;
Pan, Honguang ;
Trink, Barry ;
Gure, Ali O. ;
Nissan, Aviram .
BMC CANCER, 2013, 13
[2]   Exploring long non-coding RNAs through sequencing [J].
Atkinson, Sophie R. ;
Marguerat, Samuel ;
Baehler, Juerg .
SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY, 2012, 23 (02) :200-205
[3]  
Bardhan Kankana, 2013, Cancers (Basel), V5, P676, DOI 10.3390/cancers5020676
[4]   p53-dependent Induction of PVT1 and miR-1204 [J].
Barsotti, Anthony M. ;
Beckerman, Rachel ;
Laptenko, Oleg ;
Huppi, Konrad ;
Caplen, Natasha J. ;
Prives, Carol .
JOURNAL OF BIOLOGICAL CHEMISTRY, 2012, 287 (04) :2509-2519
[5]   Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project [J].
Birney, Ewan ;
Stamatoyannopoulos, John A. ;
Dutta, Anindya ;
Guigo, Roderic ;
Gingeras, Thomas R. ;
Margulies, Elliott H. ;
Weng, Zhiping ;
Snyder, Michael ;
Dermitzakis, Emmanouil T. ;
Stamatoyannopoulos, John A. ;
Thurman, Robert E. ;
Kuehn, Michael S. ;
Taylor, Christopher M. ;
Neph, Shane ;
Koch, Christoph M. ;
Asthana, Saurabh ;
Malhotra, Ankit ;
Adzhubei, Ivan ;
Greenbaum, Jason A. ;
Andrews, Robert M. ;
Flicek, Paul ;
Boyle, Patrick J. ;
Cao, Hua ;
Carter, Nigel P. ;
Clelland, Gayle K. ;
Davis, Sean ;
Day, Nathan ;
Dhami, Pawandeep ;
Dillon, Shane C. ;
Dorschner, Michael O. ;
Fiegler, Heike ;
Giresi, Paul G. ;
Goldy, Jeff ;
Hawrylycz, Michael ;
Haydock, Andrew ;
Humbert, Richard ;
James, Keith D. ;
Johnson, Brett E. ;
Johnson, Ericka M. ;
Frum, Tristan T. ;
Rosenzweig, Elizabeth R. ;
Karnani, Neerja ;
Lee, Kirsten ;
Lefebvre, Gregory C. ;
Navas, Patrick A. ;
Neri, Fidencio ;
Parker, Stephen C. J. ;
Sabo, Peter J. ;
Sandstrom, Richard ;
Shafer, Anthony .
NATURE, 2007, 447 (7146) :799-816
[6]   Transcriptional profiling of long non-coding RNAs and novel transcribed regions across a diverse panel of archived human cancers [J].
Brunner, Alayne L. ;
Beck, Andrew H. ;
Edris, Badreddin ;
Sweeney, Robert T. ;
Zhu, Shirley X. ;
Li, Rui ;
Montgomery, Kelli ;
Varma, Sushama ;
Gilks, Thea ;
Guo, Xiangqian ;
Foley, Joseph W. ;
Witten, Daniela M. ;
Giacomini, Craig P. ;
Flynn, Ryan A. ;
Pollack, Jonathan R. ;
Tibshirani, Robert ;
Chang, Howard Y. ;
van de Rijn, Matt ;
West, Robert B. .
GENOME BIOLOGY, 2012, 13 (08) :R75
[7]   Ultraconserved regions encoding ncRNAs are, altered in human leukemias and carcinomas [J].
Calin, George A. ;
Liu, Chang-Gong ;
Ferracin, Manuela ;
Hyslop, Terry ;
Spizzo, Riccardo ;
Sevignani, Cinzia ;
Fabbri, Muller ;
Cimmino, Amelia ;
Lee, Eun Joo ;
Wojcik, Sylwia E. ;
Shimizu, Masayoshi ;
Tili, Esmerina ;
Rossi, Simona ;
Taccioli, Cristian ;
Pichiorri, Flavia ;
Liu, Xiuping ;
Zupo, Simona ;
Herlea, Vlad ;
Gramantieri, Laura ;
Lanza, Giovanni ;
Alder, Hansjuerg ;
Rassenti, Laura ;
Volinia, Stefano ;
Schmittgen, Thomas D. ;
Kipps, Thomas J. ;
Negrini, Massimo ;
Croce, Carlo M. .
CANCER CELL, 2007, 12 (03) :215-229
[8]   A Long Noncoding RNA Controls Muscle Differentiation by Functioning as a Competing Endogenous RNA [J].
Cesana, Marcella ;
Cacchiarelli, Davide ;
Legnini, Ivano ;
Santini, Tiziana ;
Sthandier, Olga ;
Chinappi, Mauro ;
Tramontano, Anna ;
Bozzoni, Irene .
CELL, 2011, 147 (02) :358-369
[9]   Decoding the function of nuclear long non-coding RNAs [J].
Chen, Ling-Ling ;
Carmichael, Gordon G. .
CURRENT OPINION IN CELL BIOLOGY, 2010, 22 (03) :357-364
[10]   Transcriptional maps of 10 human chromosomes at 5-nucleotide resolution [J].
Cheng, J ;
Kapranov, P ;
Drenkow, J ;
Dike, S ;
Brubaker, S ;
Patel, S ;
Long, J ;
Stern, D ;
Tammana, H ;
Helt, G ;
Sementchenko, V ;
Piccolboni, A ;
Bekiranov, S ;
Bailey, DK ;
Ganesh, M ;
Ghosh, S ;
Bell, I ;
Gerhard, DS ;
Gingeras, TR .
SCIENCE, 2005, 308 (5725) :1149-1154