Guanidinium Pairing Facilitates Membrane Translocation

被引:25
作者
Allolio, Christoph [1 ,2 ]
Baxova, Katarina [1 ]
Vazdar, Mario [3 ]
Jungwirth, Pavel [1 ,4 ]
机构
[1] Czech Acad Sci, Inst Organ Chem & Biochem, Flemingovo Nam 2, CZ-16610 Prague 6, Czech Republic
[2] Univ Regensburg, Inst Phys & Theoret Chem, D-93040 Regensburg, Germany
[3] Rudjer Boskovic Inst, POB 1016, Zagreb 10000, Croatia
[4] Tampere Univ Technol, Dept Phys, POB 692, FI-33101 Tampere, Finland
基金
芬兰科学院;
关键词
CELL-PENETRATING PEPTIDES; MOLECULAR-DYNAMICS SIMULATIONS; LIPID-BILAYERS; PORE-FORMATION; TAT PEPTIDE; FREE-ENERGY; ARGININE; WATER; PERMEATION; MECHANISM;
D O I
10.1021/acs.jpcb.5b10404
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
Ab initio free energy calculations of guanidinium pairing in aqueous solution confirm the counterintuitive conjecture that the like-charge ion pair is thermodynamically stable. Transferring the guanidinium pair to the inside of a POPC lipid bilayer, like-charge ion pairing is found to occur also inside the membrane defect. It is found to contribute to the nonadditivity of ion transfer, thereby facilitating the presence of ions inside the bilayer. The effect is quantified by free energy decomposition and comparison with ammonium ions, which do not form a stable pair. The presence of two charges inside the center of the bilayer leads to the formation of a pore. Potential consequences for cell penetrating peptides and ion conduction are drawn.
引用
收藏
页码:143 / 153
页数:11
相关论文
共 62 条
[1]   H-Bonding Competition and Clustering in Aqueous LiI [J].
Allolio, Christoph ;
Salas-Illanes, Nora ;
Desmukh, Yogesh S. ;
Hansen, Michael Ryan ;
Sebastiani, Daniel .
JOURNAL OF PHYSICAL CHEMISTRY B, 2013, 117 (34) :9939-9946
[2]  
Baer MD, 2013, FARADAY DISCUSS, V160, P89, DOI [10.1039/c2fd20113e, 10.1039/C2FD20113E]
[3]   Structure, Dynamics, and Spectral Diffusion of Water from First-Principles Molecular Dynamics [J].
Bankura, Arindam ;
Karmakar, Anwesa ;
Carnevale, Vincenzo ;
Chandra, Amalendu ;
Klein, Michael L. .
JOURNAL OF PHYSICAL CHEMISTRY C, 2014, 118 (50) :29401-29411
[4]   Cell-penetrating peptides: 20 years later, where do we stand? [J].
Bechara, Cherine ;
Sagan, Sandrine .
FEBS LETTERS, 2013, 587 (12) :1693-1702
[5]   DENSITY-FUNCTIONAL EXCHANGE-ENERGY APPROXIMATION WITH CORRECT ASYMPTOTIC-BEHAVIOR [J].
BECKE, AD .
PHYSICAL REVIEW A, 1988, 38 (06) :3098-3100
[6]   The Importance of Membrane Defects-Lessons from Simulations [J].
Bennett, W. F. Drew ;
Tieleman, D. Peter .
ACCOUNTS OF CHEMICAL RESEARCH, 2014, 47 (08) :2244-2251
[7]   THE MISSING TERM IN EFFECTIVE PAIR POTENTIALS [J].
BERENDSEN, HJC ;
GRIGERA, JR ;
STRAATSMA, TP .
JOURNAL OF PHYSICAL CHEMISTRY, 1987, 91 (24) :6269-6271
[8]   Molecular dynamics simulations of a fluid bilayer of dipalmitoylphosphatidylcholine at full hydration, constant pressure, and constant temperature [J].
Berger, O ;
Edholm, O ;
Jahnig, F .
BIOPHYSICAL JOURNAL, 1997, 72 (05) :2002-2013
[9]   Effects of Phospholipid Composition on the Transfer of a Small Cationic Peptide Across a Model Biological Membrane [J].
Bonhenry, Daniel ;
Tarek, Mounir ;
Dehez, Francois .
JOURNAL OF CHEMICAL THEORY AND COMPUTATION, 2013, 9 (12) :5675-5684
[10]   Canonical sampling through velocity rescaling [J].
Bussi, Giovanni ;
Donadio, Davide ;
Parrinello, Michele .
JOURNAL OF CHEMICAL PHYSICS, 2007, 126 (01)