Reentrant Phase Transitions and Non-Equilibrium Dynamics in Membraneless Organelles

被引:72
|
作者
Milin, Anthony N. [1 ]
Deniz, Ashok A. [1 ]
机构
[1] Scripps Res Inst, Dept Integrat Struct & Computat Biol, La Jolla, CA 92037 USA
基金
美国国家卫生研究院; 美国国家科学基金会;
关键词
INTRINSICALLY DISORDERED PROTEINS; COMPLEX COACERVATION; SEPARATION; RNA; PHOSPHORYLATION; SEQUENCE; ORGANIZATION; RESOLUTION; DROPLETS; GRANULES;
D O I
10.1021/acs.biochem.8b00001
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Compartmentalization of biochemical components, interactions, and reactions is critical for the function of cells. While intracellular partitioning of molecules via membranes has been extensively studied, there has been an expanding focus in recent years on the critical cellular roles and biophysical mechanisms of action of membraneless organelles (MLOs) such as the nucleolus. In this context, a substantial body of recent work has demonstrated that liquid liquid phase separation plays a key role in MLO formation. However, less is known about MLO dissociation, with phosphorylation being the primary mechanism demonstrated thus far. In this Perspective, we focus on another mechanism for MLO dissociation that has been described in recent work, namely a reentrant phase transition (RPT). This concept, which emerges from the polymer physics field, provides a mechanistic basis for both formation and dissolution of MLOs by monotonic tuning of RNA concentration, which is an outcome of cellular processes such as transcription. Furthermore, the RPT model also predicts the formation of dynamic substructures (vacuoles) of the kind that have been observed in cellular MLOs. We end with a discussion of future directions in terms of open questions and methods that can be used to answer them, including further exploration of RPTs in vitro, in cells, and in vivo using ensemble and single-molecule methods as well as theory and computation. We anticipate that continued studies will further illuminate the important roles of reentrant phase transitions and associated non equilibrium dynamics in the spatial patterning of the biochemistry and biology of the cell.
引用
收藏
页码:2470 / 2477
页数:8
相关论文
共 50 条
  • [1] Non-equilibrium phase transitions
    Hinrichsen, Haye
    PHYSICA A-STATISTICAL MECHANICS AND ITS APPLICATIONS, 2006, 369 (01) : 1 - 28
  • [2] Non-equilibrium phase transitions in complex plasma
    Suetterlin, K. R.
    Wysocki, A.
    Raeth, C.
    Ivlev, A. V.
    Thomas, H. M.
    Khrapak, S.
    Zhdanov, S.
    Rubin-Zuzic, M.
    Goedheer, W. J.
    Fortov, V. E.
    Lipaev, A. M.
    Molotkov, V. I.
    Petrov, O. F.
    Morfill, G. E.
    Loewen, H.
    PLASMA PHYSICS AND CONTROLLED FUSION, 2010, 52 (12)
  • [3] Non-Equilibrium Phase Transitions in Actomyosin Cortices
    Fakhri, Nikta
    BIOPHYSICAL JOURNAL, 2017, 112 (03) : 2A - 2A
  • [4] Non-equilibrium phase transitions in a liquid crystal
    Dan, K.
    Roy, M.
    Datta, A.
    JOURNAL OF CHEMICAL PHYSICS, 2015, 143 (09):
  • [5] NON-EQUILIBRIUM PHASE-TRANSITIONS - A REVIEW
    VENKATARAMAN, G
    NEELAKANTAN, K
    LECTURE NOTES IN PHYSICS, 1983, 184 : 228 - 237
  • [6] Equilibrium and non-equilibrium phase transitions in copolymer polyelectrolyte hydrogels
    English, AE
    Tanaka, T
    Edelman, ER
    JOURNAL OF CHEMICAL PHYSICS, 1997, 107 (05): : 1645 - 1654
  • [7] Phase Transitions in Equilibrium and Non-Equilibrium Models on Some Topologies
    De Sousa Lima, Francisco W.
    ENTROPY, 2016, 18 (03)
  • [8] Membraneless organelles: phasing out of equilibrium
    Hondele, Maria
    Heinrich, Stephanie
    De los Rios, Paolo
    Weis, Karsten
    EMERGING TOPICS IN LIFE SCIENCES, 2020, 4 (03) : 343 - 354
  • [9] NON-EQUILIBRIUM PHASE-TRANSITIONS AND CHEMICAL INSTABILITIES
    WALGRAEF, D
    DEWEL, G
    BORCKMANS, P
    ADVANCES IN CHEMICAL PHYSICS, 1982, 49 : 311 - 355
  • [10] Universal scaling behavior of non-equilibrium phase transitions
    Lübeck, S
    INTERNATIONAL JOURNAL OF MODERN PHYSICS B, 2004, 18 (31-32): : 3977 - 4118