DNA hypermethylation in disease: mechanisms and clinical relevance

被引:267
作者
Ehrlich, Melanie [1 ,2 ]
机构
[1] Tulane Canc Ctr, SL31,JBJ 305,1430 Tulane Ave, New Orleans, LA 70122 USA
[2] Tulane Univ, Hlth Sci Ctr, Tulane Ctr Bioinformat & Genom, New Orleans, LA 70118 USA
基金
美国国家卫生研究院;
关键词
DNA hypermethylation; cancer stem cells; CpG island methylator phenotype (CIMP); brain disease; immune dysfunction; osteoporosis; atherosclerosis; TET; DNMT; aging; SMOOTH-MUSCLE-CELLS; DE-NOVO METHYLATION; CPG ISLANDS; CYTOSINE MODIFICATIONS; COLORECTAL-CANCER; TUMOR-SUPPRESSOR; STEM-CELLS; HYPOMETHYLATION; CHROMATIN; 5-HYDROXYMETHYLCYTOSINE;
D O I
10.1080/15592294.2019.1638701
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Increasing numbers of studies implicate abnormal DNA methylation in cancer and many non-malignant diseases. This is consistent with numerous findings about differentiation-associated changes in DNA methylation at promoters, enhancers, gene bodies, and sites that control higher-order chromatin structure. Abnormal increases or decreases in DNA methylation contribute to or are markers for cancer formation and tumour progression. Aberrant DNA methylation is also associated with neurological diseases, immunological diseases, atherosclerosis, and osteoporosis. In this review, I discuss DNA hypermethylation in disease and its interrelationships with normal development as well as proposed mechanisms for the origin of and pathogenic consequences of disease-associated hypermethylation. Disease-linked DNA hypermethylation can help drive oncogenesis partly by its effects on cancer stem cells and by the CpG island methylator phenotype (CIMP); atherosclerosis by disease-related cell transdifferentiation; autoimmune and neurological diseases through abnormal perturbations of cell memory; and diverse age-associated diseases by age-related accumulation of epigenetic alterations.
引用
收藏
页码:1141 / 1163
页数:23
相关论文
共 167 条
[1]   Smooth muscle cell fate and plasticity in atherosclerosis [J].
Allahverdian, Sima ;
Chaabane, Chiraz ;
Boukais, Kamel ;
Francis, Gordon A. ;
Bochaton-Piallat, Marie-Luce .
CARDIOVASCULAR RESEARCH, 2018, 114 (04) :540-550
[2]  
Alvarez-Errico D, 2017, FRONT IMMUNOL, V8, DOI [10.3389/fmicb.2017.00809, 10.3389/fpsyg.2017.00904, 10.3389/fimmu.2017.00318]
[3]   The Genotype-Tissue Expression (GTEx) pilot analysis: Multitissue gene regulation in humans [J].
Ardlie, Kristin G. ;
DeLuca, David S. ;
Segre, Ayellet V. ;
Sullivan, Timothy J. ;
Young, Taylor R. ;
Gelfand, Ellen T. ;
Trowbridge, Casandra A. ;
Maller, Julian B. ;
Tukiainen, Taru ;
Lek, Monkol ;
Ward, Lucas D. ;
Kheradpour, Pouya ;
Iriarte, Benjamin ;
Meng, Yan ;
Palmer, Cameron D. ;
Esko, Tonu ;
Winckler, Wendy ;
Hirschhorn, Joel N. ;
Kellis, Manolis ;
MacArthur, Daniel G. ;
Getz, Gad ;
Shabalin, Andrey A. ;
Li, Gen ;
Zhou, Yi-Hui ;
Nobel, Andrew B. ;
Rusyn, Ivan ;
Wright, Fred A. ;
Lappalainen, Tuuli ;
Ferreira, Pedro G. ;
Ongen, Halit ;
Rivas, Manuel A. ;
Battle, Alexis ;
Mostafavi, Sara ;
Monlong, Jean ;
Sammeth, Michael ;
Mele, Marta ;
Reverter, Ferran ;
Goldmann, Jakob M. ;
Koller, Daphne ;
Guigo, Roderic ;
McCarthy, Mark I. ;
Dermitzakis, Emmanouil T. ;
Gamazon, Eric R. ;
Im, Hae Kyung ;
Konkashbaev, Anuar ;
Nicolae, Dan L. ;
Cox, Nancy J. ;
Flutre, Timothee ;
Wen, Xiaoquan ;
Stephens, Matthew .
SCIENCE, 2015, 348 (6235) :648-660
[4]   Hypermethylation of gene body CpG islands predicts high dosage of functional oncogenes in liver cancer [J].
Arechederra, Maria ;
Daian, Fabrice ;
Yim, Annie ;
Bazai, Sehrish K. ;
Richelme, Sylvie ;
Dono, Rosanna ;
Saurin, Andrew J. ;
Habermann, Bianca H. ;
Maina, Flavio .
NATURE COMMUNICATIONS, 2018, 9
[5]   Genomic DNA Methylation Signatures Enable Concurrent Diagnosis and Clinical Genetic Variant Classification in Neurodevelopmental Syndromes [J].
Aref-Eshghi, Erfan ;
Rodenhiser, David I. ;
Schenkel, Laila C. ;
Lin, Hanxin ;
Skinner, Cindy ;
Ainsworth, Peter ;
Pare, Guillaume ;
Hood, Rebecca L. ;
Bulman, Dennis E. ;
Kernohan, Kristin D. ;
Boycott, Kym M. ;
Campeau, Philippe M. ;
Schwartz, Charles ;
Sadikovic, Bekim .
AMERICAN JOURNAL OF HUMAN GENETICS, 2018, 102 (01) :156-174
[6]   Frequent hypermethylation of orphan CpG islands with enhancer activity in cancer [J].
Bae, Min Gyun ;
Kim, Jeong Yeon ;
Choi, Jung Kyoon .
BMC MEDICAL GENOMICS, 2016, 9
[7]   Developmentally linked human DNA hypermethylation is associated with down-modulation, repression, and upregulation of transcription [J].
Baribault, Carl ;
Ehrlich, Kenneth C. ;
Ponnaluri, V. K. Chaithanya ;
Pradhan, Sriharsa ;
Lacey, Michelle ;
Ehrlich, Melanie .
EPIGENETICS, 2018, 13 (03) :275-289
[8]   The effect of morphine upon DNA methylation in ten regions of the rat brain [J].
Barrow, Timothy M. ;
Byun, Hyang-Min ;
Li, Xinyan ;
Smart, Chris ;
Wang, Yong-Xiang ;
Zhang, Yacong ;
Baccarelli, Andrea A. ;
Guo, Liqiong .
EPIGENETICS, 2017, 12 (12) :1038-1047
[9]   Mechanisms of establishment and functional significance of DNA demethylation during erythroid differentiation [J].
Bartholdy, Boris ;
Lajugie, Julien ;
Yan, Zi ;
Zhang, Shouping ;
Mukhopadhyay, Rituparna ;
Greally, John M. ;
Suzuki, Masako ;
Bouhassira, Eric E. .
BLOOD ADVANCES, 2018, 2 (15) :1833-1852
[10]   Regions of focal DNA hypermethylation and long-range hypomethylation in colorectal cancer coincide with nuclear lamina-associated domains [J].
Berman, Benjamin P. ;
Weisenberger, Daniel J. ;
Aman, Joseph F. ;
Hinoue, Toshinori ;
Ramjan, Zachary ;
Liu, Yaping ;
Noushmehr, Houtan ;
Lange, Christopher P. E. ;
van Dijk, Cornelis M. ;
Tollenaar, Rob A. E. M. ;
Van den Berg, David ;
Laird, Peter W. .
NATURE GENETICS, 2012, 44 (01) :40-U62