Translation Initiation Factor eIF3b Contains a Nine-Bladed β-Propeller and Interacts with the 40S Ribosomal Subunit

被引:29
作者
Liu, Yi [1 ]
Neumann, Piotr [1 ]
Kuhle, Bernhard [1 ]
Monecke, Thomas [1 ]
Schell, Stephanie [2 ]
Chari, Ashwin [2 ]
Ficner, Ralf [1 ]
机构
[1] Univ Gottingen, GZMB, Inst Microbiol & Genet, Dept Mol Struct Biol, D-37077 Gottingen, Germany
[2] Max Planck Inst Biophys Chem, D-37077 Gottingen, Germany
关键词
RNA RECOGNITION MOTIF; COMPLEX; BINDING; ARCHITECTURE; RECRUITMENT; INSIGHTS; SYSTEM; NIP1/C; PRT1;
D O I
10.1016/j.str.2014.03.010
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The multisubunit eukaryotic translation initiation factor 3, among which the subunit b (eIF3b) is a major scaffold protein, plays essential roles in protein synthesis. Here, we report the crystal structure of the WD40 domain of Chaetomium thermophilum eIF3b, revealing a nine-bladed beta-propeller fold. Sequence analysis indicates that this propeller architecture is common to all eIF3b orthologs. Revisiting the cryo-electron microscopy (cryo-EM) map of the 43S preinitiation complex suggests an interaction of the eIF3b with the 40S ribosomal subunit involving the ribosomal protein S9e and the 18S rRNA. This model is strongly supported by the direct binding of eIF3b to 40S ribosomes and to the isolated ribosomal protein rpS9e in vitro.
引用
收藏
页码:923 / 930
页数:8
相关论文
共 38 条
  • [1] PHENIX: a comprehensive Python']Python-based system for macromolecular structure solution
    Adams, Paul D.
    Afonine, Pavel V.
    Bunkoczi, Gabor
    Chen, Vincent B.
    Davis, Ian W.
    Echols, Nathaniel
    Headd, Jeffrey J.
    Hung, Li-Wei
    Kapral, Gary J.
    Grosse-Kunstleve, Ralf W.
    McCoy, Airlie J.
    Moriarty, Nigel W.
    Oeffner, Robert
    Read, Randy J.
    Richardson, David C.
    Richardson, Jane S.
    Terwilliger, Thomas C.
    Zwart, Peter H.
    [J]. ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 2010, 66 : 213 - 221
  • [2] Insight into Structure and Assembly of the Nuclear Pore Complex by Utilizing the Genome of a Eukaryotic Thermophile
    Amlacher, Stefan
    Sarges, Phillip
    Flemming, Dirk
    van Noort, Vera
    Kunze, Ruth
    Devos, Damien P.
    Arumugam, Manimozhiyan
    Bork, Peer
    Hurt, Ed
    [J]. CELL, 2011, 146 (02) : 277 - 289
  • [3] Complex formation by all five homologues of mammalian translation initiation factor 3 subunits from yeast Saccharomyces cerevisiae
    Asano, K
    Phan, L
    Anderson, J
    Hinnebusch, AG
    [J]. JOURNAL OF BIOLOGICAL CHEMISTRY, 1998, 273 (29) : 18573 - 18585
  • [4] Using Sculptor and Situs for simultaneous assembly of atomic components into low-resolution shapes
    Birmanns, Stefan
    Rusu, Mirabela
    Wriggers, Willy
    [J]. JOURNAL OF STRUCTURAL BIOLOGY, 2011, 173 (03) : 428 - 435
  • [5] DISSOCIATION OF MAMMALIAN POLYRIBOSOMES INTO SUBUNITS BY PUROMYCIN
    BLOBEL, G
    SABATINI, D
    [J]. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1971, 68 (02) : 390 - &
  • [6] Scalable web services for the PSIPRED Protein Analysis Workbench
    Buchan, Daniel W. A.
    Minneci, Federico
    Nugent, Tim C. O.
    Bryson, Kevin
    Jones, David T.
    [J]. NUCLEIC ACIDS RESEARCH, 2013, 41 (W1) : W349 - W357
  • [7] The many blades of the β-propeller proteins: conserved but versatile
    Chen, Cammy K. -M.
    Chan, Nei-Li
    Wang, Andrew H. -J.
    [J]. TRENDS IN BIOCHEMICAL SCIENCES, 2011, 36 (10) : 553 - 561
  • [8] The C-Terminal Region of Eukaryotic Translation Initiation Factor 3a (eIF3a) Promotes mRNA Recruitment, Scanning, and, Together with eIF3j and the eIF3b RNA Recognition Motif, Selection of AUG Start Codons
    Chiu, Wen-Ling
    Wagner, Susan
    Herrmannova, Anna
    Burela, Laxminarayana
    Zhang, Fan
    Saini, Adesh K.
    Valasek, Leos
    Hinnebusch, Alan G.
    [J]. MOLECULAR AND CELLULAR BIOLOGY, 2010, 30 (18) : 4415 - 4434
  • [9] Structure of eIF3b RNA recognition motif and its interaction with eIF3j - Structural insights into the recruitment of eIF3b to the 40 S ribosomal subunit
    ElAntak, Latifa
    Tzakos, Andreas G.
    Locker, Nicolas
    Lukavsky, Peter J.
    [J]. JOURNAL OF BIOLOGICAL CHEMISTRY, 2007, 282 (11) : 8165 - 8174
  • [10] The Indispensable N-Terminal Half of eIF3j/HCR1 Cooperates with its Structurally Conserved Binding Partner eIF3b/PRT1-RRM and with eIF1A in Stringent AUG Selection
    ElAntak, Latifa
    Wagner, Susan
    Herrmannova, Anna
    Karaskova, Martina
    Rutkai, Edit
    Lukavsky, Peter J.
    Valasek, Leos
    [J]. JOURNAL OF MOLECULAR BIOLOGY, 2010, 396 (04) : 1097 - 1116