Nested Transition Path Sampling

被引:23
|
作者
Bolhuis, Peter G. [1 ]
Csanyi, Gabor [2 ]
机构
[1] Univ Amsterdam, Vant Hoff Inst Mol Sci, Sci Pk 904, NL-1098 XH Amsterdam, Netherlands
[2] Univ Cambridge, Engn Lab, Trumpington St, Cambridge CB2 1PZ, England
关键词
EFFICIENT; ENERGIES;
D O I
10.1103/PhysRevLett.120.250601
中图分类号
O4 [物理学];
学科分类号
0702 ;
摘要
We introduce a novel transition path (TPS) sampling scheme employing nested sampling. Analogous to how nested sampling explores the entire configurational phase space for atomistic systems, nested TPS samples the entire available trajectory space in one simulation. Thermodynamic and path observables can be constructed a posteriori for all temperatures simultaneously. We exploit this to compute the rate of rare processes at arbitrarily low temperature through the coupling to easily accessible rates at high temperature. We illustrate the method on several model systems.
引用
收藏
页数:6
相关论文
共 50 条
  • [1] Transition path sampling
    Dellago, C
    Bolhuis, PG
    Geissler, PL
    ADVANCES IN CHEMICAL PHYSICS, VOL 123, 2002, 123 : 1 - 78
  • [2] Nonadiabatic transition path sampling
    Sherman, M. C.
    Corcelli, S. A.
    JOURNAL OF CHEMICAL PHYSICS, 2016, 145 (03):
  • [3] Steered transition path sampling
    Guttenberg, Nicholas
    Dinner, Aaron R.
    Weare, Jonathan
    JOURNAL OF CHEMICAL PHYSICS, 2012, 136 (23):
  • [4] Transition path sampling methods
    Dellago, C.
    Bolhuis, P. G.
    Geissler, P. L.
    COMPUTER SIMULATIONS IN CONDENSED MATTER SYSTEMS: FROM MATERIALS TO CHEMICAL BIOLOGY, VOL 1, 2006, 703 : 349 - +
  • [5] Transition path sampling on diffusive barriers
    Bolhuis, PG
    JOURNAL OF PHYSICS-CONDENSED MATTER, 2003, 15 (01) : S113 - S120
  • [6] Multiple state transition path sampling
    Rogal, Jutta
    Bolhuis, Peter G.
    JOURNAL OF CHEMICAL PHYSICS, 2008, 129 (22):
  • [7] Conformational Transition Path Sampling For Proteins
    Fujisaki, Hiroshi
    Kidera, Akinori
    BIOPHYSICAL JOURNAL, 2009, 96 (03) : 407A - 407A
  • [8] Transition-path sampling of β-hairpin folding
    Bolhuis, PG
    PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2003, 100 (21) : 12129 - 12134
  • [9] On the efficient sampling of pathways in the transition path ensemble
    Vlugt, TJH
    Smit, B
    PHYSCHEMCOMM, 2001, (02): : 1 - 7
  • [10] Transition path sampling simulations of biological systems
    Dellago, Christoph
    Bolhuis, Peter G.
    ATOMISTIC APPROACHES IN MODERN BIOLOGY: FROM QUANTUM CHEMISTRY TO MOLECULAR SIMULATIONS, 2007, 268 : 291 - 317