99-Case Study of Sporadic Aortic Dissection by Whole Exome Sequencing Indicated Novel Disease-Associated Genes and Variants in Chinese Population

被引:8
作者
Wang, Zanxin [1 ,2 ]
Zhuang, Xianmian [1 ,2 ]
Chen, Bailang [1 ,2 ]
Wen, Junmin [3 ,4 ]
Peng, Fang [1 ,2 ]
Liu, Xiling [3 ,4 ]
Wei, Minxin [1 ,2 ]
机构
[1] Chinese Acad Med Sci, Dept Cardiac Surg, Fuwai Hosp, Shenzhen, Guangdong, Peoples R China
[2] Shenzhen Sun Yat Sen Cardiovasc Hosp, Dept Cardiac Surg, Shenzhen, Guangdong, Peoples R China
[3] Chinese Acad Med Sci, Dept Intens Care, Fuwai Hosp, Shenzhen, Guangdong, Peoples R China
[4] Shenzhen Sun Yat Sen Cardiovasc Hosp, Dept Intens Care, Shenzhen, Guangdong, Peoples R China
基金
中国国家自然科学基金;
关键词
MUTATIONS; MYH11;
D O I
10.1155/2020/7857043
中图分类号
Q81 [生物工程学(生物技术)]; Q93 [微生物学];
学科分类号
071005 ; 0836 ; 090102 ; 100705 ;
摘要
Background. In this study, the whole exome sequencing in human aortic dissection, a highly lethal cardiovascular disease, was investigated to explore the aortic dissection-associated genes and variants in Chinese population.Methods. Whole exome sequencing was performed in 99 cases of aortic dissection. All single nucleotide polymorphisms (SNPs), insertions/deletions (InDels), and copy number variations (CNVs) were filtered to exclude the benign variants. Enrichment analysis and disease-gene correlation analysis were performed.Results. 3425873 SNPs, 685245 InDels, and 1177 CNVs were identified, and aortic dissection-associated SNPs, InDels, and CNVs were collected. After the disease correlation analysis, 20 candidate genes were identified. Part of these genes such asMYH11,FBN1, andACTA2were consistent with previous studies, whileMLX,DAB2IP,EP300,ZFYVE9,PML, andPRKCDwere newly identified as candidate aortic dissection-associated genes.Conclusion. The pathogenic and likely pathogenic variants in most of AD-associated genes (FBN1,MYH11,EFEMP2,TGFBR2,FBN2,COL3A1, andMYLK) were identified in our cohort study, and pathogenic CNVs involved inMYH11,COLfamily, andFBNwere also identified which are not detectable by other NGS analysis. The correlation betweenMLX,DAB2IP,EP300,ZFYVE9,PML,PRKCD, and aortic dissection was identified, andEP300may play a key role in AD.
引用
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页数:12
相关论文
共 25 条
[1]   Association of FCGR2A/FCGR3A variant rs2099684 with Takayasu arteritis in the Han Chinese population [J].
Chen, Si ;
Wen, Xiaoting ;
Li, Jing ;
Li, Yuan ;
Li, Liubing ;
Tian, Xinping ;
Yuan, Hui ;
Zhang, Fengchun ;
Li, Yongzhe .
ONCOTARGET, 2017, 8 (10) :17239-17245
[2]  
Criado FJ, 2011, TEX HEART I J, V38, P694
[3]   Aortic dissection during antiangiogenic therapy with sunitinib. A case report [J].
da Cruz Formiga, Maria Nirvana ;
Fanelli, Marcello Ferretti .
SAO PAULO MEDICAL JOURNAL, 2015, 133 (03) :275-277
[4]   Aortic and Carotid Arterial Stiffness and Epigenetic Regulator Gene Expression Changes Precede Blood Pressure Rise in Stroke-Prone Dahl Salt-Sensitive Hypertensive Rats [J].
Herrera, Victoria L. ;
Decano, Julius L. ;
Giordano, Nicholas ;
Moran, Ann Marie ;
Ruiz-Opazo, Nelson .
PLOS ONE, 2014, 9 (09)
[5]   Dual regulation of Stat1 and Stat3 by the tumor suppressor protein PML contributes to interferon α-mediated inhibition of angiogenesis [J].
Hsu, Kuo-Sheng ;
Zhao, Xuan ;
Cheng, Xiwen ;
Guan, Dongyin ;
Mahabeleshwar, Ganapati H. ;
Liu, Yu ;
Borden, Ernest ;
Jain, Mukesh K. ;
Kao, Hung-Ying .
JOURNAL OF BIOLOGICAL CHEMISTRY, 2017, 292 (24) :10048-10060
[6]  
Jenkinson C., 2014, HEART LUNG CIRCULATI, V23, pe54, DOI [10.1016/j.hlc.2013.10.063, DOI 10.1016/J.HLC.2013.10.063]
[7]   Rare, Nonsynonymous Variant in the Smooth Muscle-Specific Isoform of Myosin Heavy Chain, MYH11, R247C, Alters Force Generation in the Aorta and Phenotype of Smooth Muscle Cells [J].
Kuang, Shao-Qing ;
Kwartler, Callie S. ;
Byanova, Katerina L. ;
Pham, John ;
Gong, Limin ;
Prakash, Siddharth K. ;
Huang, Jian ;
Kamm, Kristine E. ;
Stull, James T. ;
Sweeney, H. Lee ;
Milewicz, Dianna M. .
CIRCULATION RESEARCH, 2012, 110 (11) :1411-+
[8]   Standards and Guidelines for the Interpretation and Reporting of Sequence Variants in Cancer A Joint Consensus Recommendation of the Association for Molecular Pathology, American Society of Clinical Oncology, and College of American Pathologists [J].
Li, Marilyn M. ;
Datto, Michael ;
Duncavage, Eric J. ;
Kulkarni, Shashikant ;
Lindeman, Neal I. ;
Roy, Somak ;
Tsimberidou, Apostolia M. ;
Vnencak-Jones, Cindy L. ;
Wolff, Daynna J. ;
Younes, Anas ;
Nikiforova, Marina N. .
JOURNAL OF MOLECULAR DIAGNOSTICS, 2017, 19 (01) :4-23
[9]   Aortic aneurysm: An underestimated serious finding in the EP300 mutation phenotypical spectrum [J].
Luyckx, Ilse ;
Bolar, Nikhita ;
Diness, Birgitte Rode ;
Hove, Hanne B. ;
Verstraeten, Aline ;
Loeys, Bart L. .
EUROPEAN JOURNAL OF MEDICAL GENETICS, 2019, 62 (02) :96-96
[10]   Epidemiology and clinicopathology of aortic dissection -: A population-based longitudinal study over 27 years [J].
Mészáros, I ;
Mórocz, J ;
Szlávi, J ;
Schmidt, J ;
Tornóci, L ;
Nagy, L ;
Szép, L .
CHEST, 2000, 117 (05) :1271-1278