Enhanced Sampling of Transition States

被引:17
作者
Debnath, Jayashrita [1 ,2 ]
Invernizzi, Michele [2 ,3 ]
Parrinello, Michele [1 ,2 ,4 ]
机构
[1] Swiss Fed Inst Technol, Dept Chem & Appl Biosci, USI Campus,Via Giuseppe Buffi 13, CH-6900 Lugano, Switzerland
[2] USI, Fac Informat, Ist Sci Computaz, Via Giuseppe Buffi 13, CH-6900 Lugano, Switzerland
[3] Swiss Fed Inst Technol, Dept Phys, USI Campus,Via Giuseppe Buffi 13, CH-6900 Lugano, Switzerland
[4] Ist Italiano Tecnol, Via Morego 30, I-16163 Genoa, Italy
基金
瑞士国家科学基金会;
关键词
FREE-ENERGY;
D O I
10.1021/acs.jctc.8b01283
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
The free energy landscapes of several fundamental processes are characterized by high barriers separating long-lived metastable states. In order to explore these type of landscapes, enhanced sampling methods are used. While many such methods are able to obtain sufficient sampling in order to draw the free energy, the transition states are often sparsely sampled. We propose an approach based on the Variationally Enhanced Sampling Method to enhance sampling in the transition region. To this effect, we introduce a dynamic target distribution which uses the derivative of the instantaneous free energy surface to locate the transition regions on the fly and modulate the probability of sampling different regions. Finally, we exemplify the effectiveness of this approach in enriching the number of configurations in the transition state region in the cases of a chemical reaction and of a nucleation process.
引用
收藏
页码:2454 / 2459
页数:6
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