Mechanisms underlying mutational signatures in human cancers

被引:587
作者
Helleday, Thomas [1 ]
Eshtad, Saeed [1 ]
Nik-Zainal, Serena [2 ,3 ]
机构
[1] Karolinska Inst, Dept Med Biochem & Biophys, Div Translat Med & Chem Biol, Sci Life Lab, S-17121 Stockholm, Sweden
[2] Wellcome Trust Sanger Inst, Cambridge CB10 1SA, England
[3] Cambridge Univ Hosp, NHS Trust, East Anglian Med Genet Serv, Cambridge CB2 2QQ, England
基金
英国惠康基金;
关键词
STRAND-BREAK REPAIR; ONCOGENE-INDUCED SENESCENCE; DNA-DAMAGE RESPONSE; HOMOLOGOUS RECOMBINATION; SOMATIC MUTATIONS; MISMATCH-REPAIR; CHROMOSOMAL TRANSLOCATIONS; MICROSATELLITE INSTABILITY; DEOXYRIBONUCLEIC-ACID; CYTOSINE DEAMINATION;
D O I
10.1038/nrg3729
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
The collective somatic mutations observed in a cancer are the outcome of multiple mutagenic processes that have been operative over the lifetime of a patient. Each process leaves a characteristic imprint - a mutational signature - on the cancer genome, which is defined by the type of DNA damage and DNA repair processes that result in base substitutions, insertions and deletions or structural variations. With the advent of whole-genome sequencing, researchers are identifying an increasing array of these signatures. Mutational signatures can be used as a physiological readout of the biological history of a cancer and also have potential use for discerning ongoing mutational processes from historical ones, thus possibly revealing new targets for anticancer therapies.
引用
收藏
页码:585 / 598
页数:14
相关论文
共 114 条
  • [1] Signatures of mutational processes in human cancer
    Alexandrov, Ludmil B.
    Nik-Zainal, Serena
    Wedge, David C.
    Aparicio, Samuel A. J. R.
    Behjati, Sam
    Biankin, Andrew V.
    Bignell, Graham R.
    Bolli, Niccolo
    Borg, Ake
    Borresen-Dale, Anne-Lise
    Boyault, Sandrine
    Burkhardt, Birgit
    Butler, Adam P.
    Caldas, Carlos
    Davies, Helen R.
    Desmedt, Christine
    Eils, Roland
    Eyfjord, Jorunn Erla
    Foekens, John A.
    Greaves, Mel
    Hosoda, Fumie
    Hutter, Barbara
    Ilicic, Tomislav
    Imbeaud, Sandrine
    Imielinsk, Marcin
    Jaeger, Natalie
    Jones, David T. W.
    Jones, David
    Knappskog, Stian
    Kool, Marcel
    Lakhani, Sunil R.
    Lopez-Otin, Carlos
    Martin, Sancha
    Munshi, Nikhil C.
    Nakamura, Hiromi
    Northcott, Paul A.
    Pajic, Marina
    Papaemmanuil, Elli
    Paradiso, Angelo
    Pearson, John V.
    Puente, Xose S.
    Raine, Keiran
    Ramakrishna, Manasa
    Richardson, Andrea L.
    Richter, Julia
    Rosenstiel, Philip
    Schlesner, Matthias
    Schumacher, Ton N.
    Span, Paul N.
    Teague, Jon W.
    [J]. NATURE, 2013, 500 (7463) : 415 - +
  • [2] Deciphering Signatures of Mutational Processes Operative in Human Cancer
    Alexandrov, Ludmil B.
    Nik-Zainal, Serena
    Wedge, David C.
    Campbell, Peter J.
    Stratton, Michael R.
    [J]. CELL REPORTS, 2013, 3 (01): : 246 - 259
  • [3] C→T mutagenesis and γ-radiation sensitivity due to deficiency in the Smug1 and Ung DNA glycosylases
    An, Q
    Robins, P
    Lindahl, T
    Barnes, DE
    [J]. EMBO JOURNAL, 2005, 24 (12) : 2205 - 2213
  • [4] DNA double-strand breaks associated with replication forks are predominantly repaired by homologous recombination involving an exchange mechanism in mammalian cells
    Arnaudeau, C
    Lundin, C
    Helleday, T
    [J]. JOURNAL OF MOLECULAR BIOLOGY, 2001, 307 (05) : 1235 - 1245
  • [5] Punctuated Evolution of Prostate Cancer Genomes
    Baca, Sylvan C.
    Prandi, Davide
    Lawrence, Michael S.
    Mosquera, Juan Miguel
    Romanel, Alessandro
    Drier, Yotam
    Park, Kyung
    Kitabayashi, Naoki
    MacDonald, Theresa Y.
    Ghandi, Mahmoud
    Van Allen, Eliezer
    Kryukov, Gregory V.
    Sboner, Andrea
    Theurillat, Jean-Philippe
    Soong, T. David
    Nickerson, Elizabeth
    Auclair, Daniel
    Tewari, Ashutosh
    Beltran, Himisha
    Onofrio, Robert C.
    Boysen, Gunther
    Guiducci, Candace
    Barbieri, Christopher E.
    Cibulskis, Kristian
    Sivachenko, Andrey
    Carter, Scott L.
    Saksena, Gordon
    Voet, Douglas
    Ramos, Alex H.
    Winckler, Wendy
    Cipicchio, Michelle
    Ardlie, Kristin
    Kantoff, Philip W.
    Berger, Michael F.
    Gabriel, Stacey B.
    Golub, Todd R.
    Meyerson, Matthew
    Lander, Eric S.
    Elemento, Olivier
    Getz, Gad
    Demichelis, Francesca
    Rubin, Mark A.
    Garraway, Levi A.
    [J]. CELL, 2013, 153 (03) : 666 - 677
  • [6] Human Epidermal Growth Factor Receptor 2 Assessment in a Case-Control Study: Comparison of Fluorescence In Situ Hybridization and Quantitative Reverse Transcription Polymerase Chain Reaction Performed by Central Laboratories
    Baehner, Frederick L.
    Achacoso, Ninah
    Maddala, Tara
    Shak, Steve
    Quesenberry, Charles P., Jr.
    Goldstein, Lynn C.
    Gown, Allen M.
    Habel, Laurel A.
    [J]. JOURNAL OF CLINICAL ONCOLOGY, 2010, 28 (28) : 4300 - 4306
  • [7] Identification of Early Replicating Fragile Sites that Contribute to Genome Instability
    Barlow, Jacqueline H.
    Faryabi, Robert B.
    Callen, Elsa
    Wong, Nancy
    Malhowski, Amy
    Chen, Hua Tang
    Gutierrez-Cruz, Gustavo
    Sun, Hong-Wei
    McKinnon, Peter
    Wright, George
    Casellas, Rafael
    Robbiani, Davide F.
    Staudt, Louis
    Fernandez-Capetillo, Oscar
    Nussenzweig, Andre
    [J]. CELL, 2013, 152 (03) : 620 - 632
  • [8] Oncogene-induced senescence is part of the tumorigenesis barrier imposed by DNA damage checkpoints
    Bartkova, Jirina
    Rezaei, Nousin
    Liontos, Michalis
    Karakaidos, Panagiotis
    Kletsas, Dimitris
    Issaeva, Natalia
    Vassiliou, Leandros-Vassilios F.
    Kolettas, Evangelos
    Niforou, Katerina
    Zoumpourlis, Vassilis C.
    Takaoka, Munenori
    Nakagawa, Hiroshi
    Tort, Frederic
    Fugger, Kasper
    Johansson, Fredrik
    Sehested, Maxwell
    Andersen, Claus L.
    Dyrskjot, Lars
    Orntoft, Torben
    Lukas, Jiri
    Kittas, Christos
    Helleday, Thomas
    Halazonetis, Thanos D.
    Bartek, Jiri
    Gorgoulis, Vassilis G.
    [J]. NATURE, 2006, 444 (7119) : 633 - 637
  • [9] Accurate whole human genome sequencing using reversible terminator chemistry
    Bentley, David R.
    Balasubramanian, Shankar
    Swerdlow, Harold P.
    Smith, Geoffrey P.
    Milton, John
    Brown, Clive G.
    Hall, Kevin P.
    Evers, Dirk J.
    Barnes, Colin L.
    Bignell, Helen R.
    Boutell, Jonathan M.
    Bryant, Jason
    Carter, Richard J.
    Cheetham, R. Keira
    Cox, Anthony J.
    Ellis, Darren J.
    Flatbush, Michael R.
    Gormley, Niall A.
    Humphray, Sean J.
    Irving, Leslie J.
    Karbelashvili, Mirian S.
    Kirk, Scott M.
    Li, Heng
    Liu, Xiaohai
    Maisinger, Klaus S.
    Murray, Lisa J.
    Obradovic, Bojan
    Ost, Tobias
    Parkinson, Michael L.
    Pratt, Mark R.
    Rasolonjatovo, Isabelle M. J.
    Reed, Mark T.
    Rigatti, Roberto
    Rodighiero, Chiara
    Ross, Mark T.
    Sabot, Andrea
    Sankar, Subramanian V.
    Scally, Aylwyn
    Schroth, Gary P.
    Smith, Mark E.
    Smith, Vincent P.
    Spiridou, Anastassia
    Torrance, Peta E.
    Tzonev, Svilen S.
    Vermaas, Eric H.
    Walter, Klaudia
    Wu, Xiaolin
    Zhang, Lu
    Alam, Mohammed D.
    Anastasi, Carole
    [J]. NATURE, 2008, 456 (7218) : 53 - 59
  • [10] Algorithms and applications for approximate nonnegative matrix factorization
    Berry, Michael W.
    Browne, Murray
    Langville, Amy N.
    Pauca, V. Paul
    Plemmons, Robert J.
    [J]. COMPUTATIONAL STATISTICS & DATA ANALYSIS, 2007, 52 (01) : 155 - 173