RIG-I Recognizes the 5′ Region of Dengue and Zika Virus Genomes

被引:89
作者
Chazal, Maxime [1 ,2 ,3 ]
Beauclair, Guillaume [1 ]
Gracias, Segolene [1 ]
Najburg, Valerie [1 ]
Simon-Loriere, Etienne [2 ,3 ]
Tangy, Frederic [1 ]
Komarova, Anastassia V. [1 ]
Jouvenet, Nolwenn [1 ]
机构
[1] Inst Pasteur, Unite Genom Virale & Vaccinat, Dept Virol, CNRS,UMR 3569, F-75015 Paris, France
[2] Inst Pasteur, Unite Genet Fonct Malad Infect, F-75015 Paris, France
[3] Inst Pasteur, CNRS, UMR2000, Genom Evolut Modelisat & Sante, F-75015 Paris, France
来源
CELL REPORTS | 2018年 / 24卷 / 02期
基金
欧盟地平线“2020”;
关键词
RNA VIRUSES; MDA5; REPLICATION; ACTIVATION; ROLES; CELLS; PICORNAVIRUS; RECEPTORS; INFECTION; IMMUNITY;
D O I
10.1016/j.celrep.2018.06.047
中图分类号
Q2 [细胞生物学];
学科分类号
071009 ; 090102 ;
摘要
The flavivirus genus comprises major human pathogens, such as Dengue (DENV) and Zika (ZIKV) viruses. RIG-I and MDA5 are key cytoplasmic pathogen recognition receptors that are implicated in detecting viral RNAs. Here, we show that RNAs that co-purified with RIG-I during DENV infection are immuno-stimulatory, whereas RNAs bound to MDA5 are not. An affinity purification method combined with next-generation sequencing (NGS) revealed that the 5' region of the DENV genome is recognized by RIG-I. No DENV RNA was bound to MDA5. In vitro production of fragments of the DENV genome confirmed the NGS data and revealed that the 5' end of the genome, when bearing 5'-triphosphates, is the RIG-I ligand. The 5' region of the ZIKV genome is also a RIG-I agonist. We propose that RIG-I binds to the highly structured and conserved 5' region of flavivirus nascent transcripts before capping and that this mechanism leads to interferon secretion by infected cells.
引用
收藏
页码:320 / 328
页数:9
相关论文
共 35 条
[1]   Dengue virus NS2B protein targets cGAS for degradation and prevents mitochondrial DNA sensing during infection [J].
Aguirre, Sebastian ;
Luthra, Priya ;
Sanchez-Aparicio, Maria T. ;
Maestre, Ana M. ;
Patel, Jenish ;
Lamothe, Francise ;
Fredericks, Anthony C. ;
Tripathi, Shashank ;
Zhu, Tongtong ;
Pintado-Silva, Jessica ;
Webb, Laurence G. ;
Bernal-Rubio, Dabeiba ;
Solovyov, Alexander ;
Greenbaum, Benjamin ;
Simon, Viviana ;
Basler, Christopher F. ;
Mulder, Lubbertus C. F. ;
Garcia-Sastre, Adolfo ;
Fernandez-Sesma, Ana .
NATURE MICROBIOLOGY, 2017, 2 (05)
[2]  
Baud D, 2017, LANCET, V390, P2099, DOI [10.1016/S0140-6736(17)31450-2, 10.1016/s0140-6736(17)31450-2]
[3]   Activation of host pattern recognition receptors by viruses [J].
Brennan, Kiva ;
Bowie, Andrew G. .
CURRENT OPINION IN MICROBIOLOGY, 2010, 13 (04) :503-507
[4]   Flavivirus induces interferon-beta gene expression through a pathway involving RIG-I-dependent IRF-3 and PI3K-dependent NF-κB activation [J].
Chang, TH ;
Liao, CL ;
Lin, YL .
MICROBES AND INFECTION, 2006, 8 (01) :157-171
[5]   Essential role of RIG-I in the activation of endothelial cells by dengue virus [J].
da Conceicao, Thais Moraes ;
Rust, Naiara Miranda ;
Egypto Rosa Berbel, Ana Carolina ;
Martins, Nathalia Balthazar ;
do Nascimento Santos, Carlos Antonio ;
Da Poian, Andrea Thompson ;
de Arruda, Luciana Barros .
VIROLOGY, 2013, 435 (02) :281-292
[6]   Comparative analysis of viral RNA signatures on different RIG-I-like receptors [J].
David, Raul Y. Sanchez ;
Combredet, Chantal ;
Sismeiro, Odile ;
Dillies, Marie-Agnes ;
Jagla, Bernd ;
Coppee, Jean-Yves ;
Mura, Marie ;
Galla, Mathilde Guerbois ;
Despres, Philippe ;
Tangy, Frederic ;
Komarova, Anastassia V. .
ELIFE, 2016, 5
[7]   Zika virus genome from the Americas [J].
Enfissi, Antoine ;
Codrington, John ;
Roosblad, Jimmy ;
Kazanji, Mirdad ;
Rousset, Dominique .
LANCET, 2016, 387 (10015) :227-228
[8]   Emerging complexity and new roles for the RIG-I-like receptors in innate antiviral immunity [J].
Errett, John S. ;
Gale, Michael, Jr. .
VIROLOGICA SINICA, 2015, 30 (03) :163-173
[9]   The Essential, Nonredundant Roles of RIG-I and MDA5 in Detecting and Controlling West Nile Virus Infection [J].
Errett, John S. ;
Suthar, Mehul S. ;
McMillan, Aimee ;
Diamond, Michael S. ;
Gale, Michael, Jr. .
JOURNAL OF VIROLOGY, 2013, 87 (21) :11416-11425
[10]   MDA5 Detects the Double-Stranded RNA Replicative Form in Picornavirus-Infected Cells [J].
Feng, Qian ;
Hato, Stanleyson V. ;
Langereis, Martijn A. ;
Zoll, Jan ;
Virgen-Slane, Richard ;
Peisley, Alys ;
Hur, Sun ;
Semler, Bert L. ;
van Rij, Ronald P. ;
van Kuppeveld, Frank J. M. .
CELL REPORTS, 2012, 2 (05) :1187-1196