Analyzing structure-function relationships of artificial and cancer-associated PARP1 variants by reconstituting TALEN-generated HeLa PARP1 knock-out cells

被引:32
作者
Rank, Lisa [1 ]
Veith, Sebastian [1 ,2 ]
Gwosch, Eva C. [3 ,4 ]
Demgenski, Janine [1 ]
Ganz, Magdalena [3 ,4 ]
Jongmans, Marjolijn C. [5 ,6 ]
Vogel, Christopher [1 ]
Fischbach, Arthur [1 ,4 ]
Buerger, Stefanie [7 ]
Fischer, Jan M. F. [1 ,4 ]
Zubel, Tabea [1 ,4 ]
Stier, Anna [1 ]
Renner, Christina [1 ]
Schmalz, Michael [8 ]
Beneke, Sascha [1 ,9 ]
Groettrup, Marcus [7 ,10 ]
Kuiper, Roland P. [5 ]
Buerkle, Alexander [1 ]
Ferrando-May, Elisa [3 ]
Mangerich, Aswin [1 ]
机构
[1] Univ Konstanz, Dept Biol, Mol Toxicol Grp, D-78457 Constance, Germany
[2] Univ Konstanz, Dept Biol, Res Training Grp 1331, D-78457 Constance, Germany
[3] Univ Konstanz, Dept Biol, Bioimaging Ctr, D-78457 Constance, Germany
[4] Univ Konstanz, Konstanz Res Sch Chem Biol, Dept Biol, D-78457 Constance, Germany
[5] Radboud Univ Nijmegen, Dept Human Genet, Med Ctr Nijmegen, Nijmegen Ctr Mol Life Sci, Nijmegen, Netherlands
[6] Univ Med Ctr Utrecht, Dept Med Genet, Utrecht, Netherlands
[7] Univ Konstanz, Dept Biol, FlowKon FACS Facil, D-78457 Constance, Germany
[8] Univ Konstanz, Dept Phys, Dept Biol, Ctr Appl Photon, D-78457 Constance, Germany
[9] Univ Konstanz, Dept Biol, Ecotoxicol Grp, D-78457 Constance, Germany
[10] Univ Konstanz, Dept Biol, Immunol Grp, D-78457 Constance, Germany
关键词
PROTEOME-WIDE IDENTIFICATION; STRAND BREAK REPAIR; POLY(ADP-RIBOSE) POLYMERASE-1; DNA-DAMAGE; CELLULAR POLY(ADP-RIBOSYL)ATION; ADP-RIBOSYLATION; DIGENIC INHERITANCE; BINDING-PROTEINS; PHOSPHORYLATION; INHIBITORS;
D O I
10.1093/nar/gkw859
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Genotoxic stress activates PARP1, resulting in the post-translational modification of proteins with poly(ADP-ribose) (PAR). We genetically deleted PARP1 in one of the most widely used human cell systems, i. e. HeLa cells, via TALEN-mediated gene targeting. After comprehensive characterization of these cells during genotoxic stress, we analyzed structure-function relationships of PARP1 by reconstituting PARP1 KO cells with a series of PARP1 variants. Firstly, we verified that the PARP1\E988K mutant exhibits mono-ADP-ribosylation activity and we demonstrate that the PARP1\L713F mutant is constitutively active in cells. Secondly, both mutants exhibit distinct recruitment kinetics to sites of laser-induced DNA damage, which can potentially be attributed to non-covalent PARP1-PAR interaction via several PAR binding motifs. Thirdly, both mutants had distinct functional consequences in cellular patho-physiology, i. e. PARP1\L713F expression triggered apoptosis, whereas PARP1\E988K reconstitution caused a DNA-damage-induced G2 arrest. Importantly, both effects could be rescued by PARP inhibitor treatment, indicating distinct cellular consequences of constitutive PARylation and mono(ADP-ribosyl) ation. Finally, we demonstrate that the cancer-associated PARP1 SNP variant (V762A) as well as a newly identified inherited PARP1 mutation (F304L\V762A) present in a patient with pediatric colorectal carcinoma exhibit altered biochemical and cellular properties, thereby potentially supporting human carcinogenesis. Together, we establish a novel cellular model for PARylation research, by revealing strong structure-function relationships of natural and artificial PARP1 variants.
引用
收藏
页码:10386 / 10405
页数:20
相关论文
共 85 条
[1]   The haplotype-resolved genome and epigenome of the aneuploid HeLa cancer cell line [J].
Adey, Andrew ;
Burton, Joshua N. ;
Kitzman, Jacob O. ;
Hiatt, Joseph B. ;
Lewis, Alexandra P. ;
Martin, Beth K. ;
Qiu, Ruolan ;
Lee, Choli ;
Shendure, Jay .
NATURE, 2013, 500 (7461) :207-+
[2]   The zinc-finger domains of PARP1 cooperate to recognize DNA strand breaks [J].
Ali, Ammar A. E. ;
Timinszky, Gyula ;
Arribas-Bosacoma, Raquel ;
Kozlowski, Marek ;
Hassa, Paul O. ;
Hassler, Markus ;
Ladurner, Andreas G. ;
Pearl, Laurence H. ;
Oliver, Antony W. .
NATURE STRUCTURAL & MOLECULAR BIOLOGY, 2012, 19 (07) :685-+
[3]   Liquid demixing of intrinsically disordered proteins is seeded by poly(ADP-ribose) [J].
Altmeyer, Matthias ;
Neelsen, Kai J. ;
Teloni, Federico ;
Pozdnyakova, Irina ;
Pellegrino, Stefania ;
Grofte, Merete ;
Rask, Maj-Britt Druedahl ;
Streicher, Werner ;
Jungmichel, Stephanie ;
Nielsen, Michael Lund ;
Lukas, Jiri .
NATURE COMMUNICATIONS, 2015, 6
[4]   Selective loss of poly(ADP-ribose) and the 85-kDa fragment of poly(ADP-ribose) polymerase in nucleoli during alkylation-induced apoptosis of HeLa cells [J].
Alvarez-Gonzalez, R ;
Spring, H ;
Müller, M ;
Bürkle, A .
JOURNAL OF BIOLOGICAL CHEMISTRY, 1999, 274 (45) :32122-32126
[5]   PARP-2, a novel mammalian DNA damage-dependent poly(ADP-ribose) polymerase [J].
Amé, JC ;
Rolli, V ;
Schreiber, V ;
Niedergang, C ;
Apiou, F ;
Decker, P ;
Muller, S ;
Hoger, T ;
Murcia, JMD ;
de Murcia, G .
JOURNAL OF BIOLOGICAL CHEMISTRY, 1999, 274 (25) :17860-17868
[6]   Poly(ADP-ribose) polymerase-dependent energy depletion occurs through inhibition of glycolysis [J].
Andrabi, Shaida A. ;
Umanah, George K. E. ;
Chang, Calvin ;
Stevens, Daniel A. ;
Karuppagounder, Senthilkumar S. ;
Gagne, Jean-Philippe ;
Poirier, Guy G. ;
Dawson, Valina L. ;
Dawson, Ted M. .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2014, 111 (28) :10209-10214
[7]   Biology of Poly(ADP-Ribose) Polymerases: The Factotums of Cell Maintenance [J].
Bai, Peter .
MOLECULAR CELL, 2015, 58 (06) :947-958
[8]   Poly(ADP-ribose) polymerases in double-strand break repair: Focus on PARP1, PARP2 and PARP3 [J].
Beck, Carole ;
Robert, Isabelle ;
Reina-San-Martin, Bernardo ;
Schreiber, Valerie ;
Dantzer, Francoise .
EXPERIMENTAL CELL RESEARCH, 2014, 329 (01) :18-25
[9]   Comparative characterisation of poly(ADP-ribose) polymerase-1 from two mammalian species with different life span [J].
Beneke, S ;
Alvarez-Gonzalez, R ;
Bürkle, A .
EXPERIMENTAL GERONTOLOGY, 2000, 35 (08) :989-1002
[10]   Enzyme characteristics of recombinant poly(ADP-ribose) polymerases-1 of rat and human origin mirror the correlation between cellular poly(ADP-ribosyl)ation capacity and species-specific life span [J].
Beneke, Sascha ;
Scherr, Anna-Lena ;
Ponath, Viviane ;
Popp, Oliver ;
Buerkle, Alexander .
MECHANISMS OF AGEING AND DEVELOPMENT, 2010, 131 (05) :366-369