Pivotal Role of Computers and Software in Mass Spectrometry - SEQUEST and 20 Years of Tandem MS Database Searching

被引：17

作者：

Yates, John R., III ^{[1
]}

机构：

[1] Scripps Res Inst, Chem Physiol & Mol & Cellular Neurobiol, La Jolla, CA 92037 USA

来源：

JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY | 2015年 / 26卷 / 11期

基金：

美国国家卫生研究院;

关键词：

SEQUEST; Database searching; Tandem mass spectrometry; Computers; Proteomics; FAST-ATOM-BOMBARDMENT; AMINO-ACID-SEQUENCE; COLLISION ACTIVATED DISSOCIATION; CROSS-CORRELATION ALGORITHM; SPECTRAL DATA; AIDED INTERPRETATION; PROTEIN COMPLEXES; YEAST PROTEOME; SACCHAROMYCES-CEREVISIAE; ELECTROSPRAY-IONIZATION;

D O I：

10.1007/s13361-015-1220-0

中图分类号：

Q5 [生物化学];

学科分类号：

071010 ; 081704 ;

摘要：

Advances in computer technology and software have driven developments in mass spectrometry over the last 50 years. Computers and software have been impactful in three areas: the automation of difficult calculations to aid interpretation, the collection of data and control of instruments, and data interpretation. As the power of computers has grown, so too has the utility and impact on mass spectrometers and their capabilities. This has been particularly evident in the use of tandem mass spectrometry data to search protein and nucleotide sequence databases to identify peptide and protein sequences. This capability has driven the development of many new approaches to study biological systems, including the use of "bottom-up shotgun proteomics" to directly analyze protein mixtures.

引用

页码：1804 / 1813

页数：10

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