Genome Sequencing of SHH Medulloblastoma Predicts Genotype-Related Response to Smoothened Inhibition

被引:570
作者
Kool, Marcel [1 ]
Jones, David T. W. [1 ]
Jaeger, Natalie [2 ]
Northcott, Paul A. [1 ]
Pugh, Trevor J. [3 ]
Hovestadt, Volker [4 ]
Piro, Rosario M. [2 ]
Esparza, L. Adriana [5 ]
Markant, Shirley L. [5 ]
Remke, Marc [6 ]
Milde, Till [7 ]
Bourdeaut, Franck [8 ,9 ]
Ryzhova, Marina [10 ]
Sturm, Dominik [1 ]
Pfaff, Elke [1 ]
Stark, Sebastian [1 ]
Hutter, Sonja [1 ]
Seker-Cin, Huriye [1 ]
Johann, Pascal [1 ]
Bender, Sebastian [1 ]
Schmidt, Christin [1 ]
Rausch, Tobias [11 ]
Shih, David [6 ]
Reimand, Jueri [12 ]
Sieber, Laura [1 ]
Wittmann, Andrea [1 ]
Linke, Linda [1 ]
Witt, Hendrik [1 ,7 ]
Weber, Ursula D. [4 ]
Zapatka, Marc [4 ]
Koenig, Rainer [2 ,13 ,14 ]
Beroukhim, Rameen [3 ,15 ,16 ,17 ]
Bergthold, Guillaume [3 ,15 ,18 ]
van Sluis, Peter [19 ]
Volckmann, Richard [19 ]
Koster, Jan [19 ]
Versteeg, Rogier [19 ]
Schmidt, Sabine [20 ]
Wolf, Stephan [20 ]
Lawerenz, Chris [21 ]
Bartholomae, Cynthia C. [22 ,23 ]
von Kalle, Christof [22 ,23 ]
Unterberg, Andreas [22 ,23 ]
Herold-Mende, Christel [22 ,23 ]
Hofer, Silvia [24 ]
Kulozik, Andreas E. [7 ]
von Deimling, Andreas [25 ,26 ]
Scheurlen, Wolfram [27 ]
Felsberg, Joerg [28 ]
Reifenberger, Guido [28 ]
机构
[1] German Canc Res Ctr, Div Pediat Neurooncol, D-69121 Heidelberg, Germany
[2] German Canc Res Ctr, Div Theoret Bioinformat, D-69121 Heidelberg, Germany
[3] Broad Inst MIT & Harvard, Cambridge, MA 02141 USA
[4] German Canc Res Ctr, Div Mol Genet, D-69121 Heidelberg, Germany
[5] Sanford Burnham Med Res Inst, La Jolla, CA 92037 USA
[6] Hosp Sick Children, Arthur & Sonia Labatt Brain Tumour Res Ctr, Toronto, ON M5G 1L7, Canada
[7] Univ Heidelberg Hosp, Dept Pediat Oncol Hematol & Immunol, D-69120 Heidelberg, Germany
[8] Inst Curie, F-75005 Paris, France
[9] Inst Curie, INSERM, U830, F-75248 Paris, France
[10] NN Burdenko Inst Neurosurg, Dept Neuropathol, Moscow 125047, Russia
[11] EMBL, D-69117 Heidelberg, Germany
[12] Univ Toronto, Donnelly Ctr, Toronto, ON M5S 3E1, Canada
[13] Jena Univ Hosp, Ctr Sepsis Control & Care, Integrated Res & Treatment Ctr, D-07747 Jena, Germany
[14] HKI, Leibniz Inst Nat Prod Res & Infect Biol, D-07745 Jena, Germany
[15] Dana Farber Canc Inst, Dept Canc Biol, Boston, MA 02215 USA
[16] Brigham & Womens Hosp, Dept Med, Boston, MA 02115 USA
[17] Harvard Univ, Sch Med, Boston, MA 02115 USA
[18] Univ Paris 11, Gustave Roussy Canc Inst, CNRS Vectorol & Anticanc Therapeut, UMR 8203, F-94805 Villejuif, France
[19] Univ Amsterdam, Acad Med Ctr, Dept Oncogen, NL-1105 AZ Amsterdam, Netherlands
[20] German Canc Res Ctr, Genom & Prote Core Facil, D-69121 Heidelberg, Germany
[21] German Canc Res Ctr, Data Management Facil, D-69121 Heidelberg, Germany
[22] German Canc Res Ctr, Div Translat Oncol, D-69121 Heidelberg, Germany
[23] Natl Ctr Tumor Dis NCT, D-69121 Heidelberg, Germany
[24] Univ Zurich Hosp, Dept Oncol, CH-8006 Zurich, Switzerland
[25] Heidelberg Univ, Dept Neuropathol, D-69120 Heidelberg, Germany
[26] German Canc Res Ctr, Clin Cooperat Unit Neuropathol, D-69121 Heidelberg, Germany
[27] Nurnberg Childrens Hosp, Cnopfsche Kinderklin, D-90419 Nurnberg, Germany
[28] Univ Dusseldorf, Dept Neuropathol, D-40225 Dusseldorf, Germany
[29] Univ Hosp Munster, Inst Neuropathol, D-48149 Munster, Germany
[30] Univ Calif San Diego, Dept Pediat, La Jolla, CA 92093 USA
[31] Univ Calif San Diego, Dept Neurosci, La Jolla, CA 92093 USA
[32] Rady Childrens Hosp, San Diego, CA 92123 USA
[33] Duke Univ, Med Ctr, Dept Pediat, Div Pediat Hematol Oncol, Durham, NC 27710 USA
[34] Duke Univ, Med Ctr, Dept Surg, Durham, NC 27710 USA
[35] McGill Univ, Dept Pediat & Human Genet, Montreal, PQ H3H 1P3, Canada
[36] Univ Calif San Francisco, Dept Pathol, San Francisco, CA 94143 USA
[37] Univ Calif San Francisco, Dept Lab Med, San Francisco, CA 94143 USA
[38] Univ Calif San Francisco, Dept Neurol Surg, Brain Tumor Res Ctr, San Francisco, CA 94143 USA
[39] Arthur & Sonia Labatt Brain Tumour Res Ctr, Dept Neuropathol, Toronto, ON M5G 1L7, Canada
[40] Univ Paris 05, F-75006 Paris, France
[41] Manchester Acad Hlth Sci Ctr, Manchester M13 9NT, Lancs, England
[42] Univ Cambridge, Dept Pathol, Cambridge CB2 1QP, England
[43] Dana Farber Canc Inst, Boston, MA 02215 USA
[44] Boston Childrens Hosp, Boston, MA 02215 USA
[45] Stanford Univ, Sch Med, Dept Neurol & Neurosurg, Stanford, CA 94305 USA
[46] German Canc Res Ctr, CCU Pediat Oncol, D-69121 Heidelberg, Germany
[47] Univ Munich, Ctr Neuropathol & Prion Res, D-81377 Munich, Germany
关键词
HEDGEHOG PATHWAY INHIBITOR; TERT PROMOTER MUTATIONS; PEDIATRIC MEDULLOBLASTOMA; MOUSE MODELS; TUMORS; ADULT; ITRACONAZOLE; RESISTANCE; SUBGROUPS; GROWTH;
D O I
10.1016/j.ccr.2014.02.004
中图分类号
R73 [肿瘤学];
学科分类号
100214 ;
摘要
Smoothened (SMO) inhibitors recently entered clinical trials for sonic-hedgehog-driven medulloblastoma (SHH-MB). Clinical response is highly variable. To understand the mechanism(s) of primary resistance and identify pathways cooperating with aberrant SHH signaling, we sequenced and profiled a large cohort of SHH-MBs (n = 133). SHH pathway mutations involved PTCH1 (across all age groups), SUFU (infants, including germline), and SMO (adults). Children >3 years old harbored an excess of downstream MYCN and GLI2 amplifications and frequent TP53 mutations, often in the gernnline, all of which were rare in infants and adults. Functional assays in different SHH-MB xenograft models demonstrated that SHH-MBs harboring a PTCH1 mutation were responsive to SMO inhibition, whereas tumors harboring an SUFU mutation or MYCN amplification were primarily resistant.
引用
收藏
页码:393 / 405
页数:13
相关论文
共 45 条
  • [1] The predictive value of a 5-gene signature as a patient pre-selection tool in medulloblastoma for Hedgehog pathway inhibitor therapy
    Amakye, Dereck
    Robinson, Douglas
    Rose, Kristine
    Cho, Jae
    Ligon, Keith L.
    Sharp, Thad
    Haider, Asifa
    Bandaru, Raj
    Ando, Yuichi
    Geoerger, Birgit
    Doz, Francois
    Ashley, David
    Hargrave, Darren
    Casanova, Michela
    Rodon, Jordi
    Thomas, Anne
    Mita, Alain
    MacDonald, Tobey
    Kieran, Mark W.
    [J]. CANCER RESEARCH, 2012, 72
  • [2] Arsenic trioxide inhibits human cancer cell growth and tumor development in mice by blocking Hedgehog/GLI pathway
    Beauchamp, Elspeth M.
    Ringer, Lymor
    Bulut, Gulay
    Sajwan, Kamal P.
    Hall, Michael D.
    Lee, Yi-Chien
    Peaceman, Daniel
    Oezdemirli, Metin
    Rodriguez, Olga
    Macdonald, Tobey J.
    Albanese, Chris
    Toretsky, Jeffrey A.
    Uren, Aykut
    [J]. JOURNAL OF CLINICAL INVESTIGATION, 2011, 121 (01) : 148 - 160
  • [3] Adult neuroectodermal tumors of posterior fossa (medulloblastoma) and of supratentorial sites (stPNET)
    Brandes, Alba A.
    Franceschi, Enrico
    Tosoni, Alicia
    Reni, Michele
    Gatta, Gemma
    Vecht, Charles
    Kortmann, Rolf D.
    [J]. CRITICAL REVIEWS IN ONCOLOGY HEMATOLOGY, 2009, 71 (02) : 165 - 179
  • [4] High Frequency of Germline SUFU Mutations in Children With Desmoplastic/Nodular Medulloblastoma Younger Than 3 Years of Age
    Brugieres, Laurence
    Remenieras, Audrey
    Pierron, Gaelle
    Varlet, Pascale
    Forget, Sebastien
    Byrde, Veronique
    Bombled, Johny
    Puget, Stephanie
    Caron, Olivier
    Dufour, Christelle
    Delattre, Olivier
    Bressac-de Paillerets, Brigitte
    Grill, Jacques
    [J]. JOURNAL OF CLINICAL ONCOLOGY, 2012, 30 (17) : 2087 - 2093
  • [5] Interfering with Resistance to Smoothened Antagonists by Inhibition of the PI3K Pathway in Medulloblastoma
    Buonamici, Silvia
    Williams, Juliet
    Morrissey, Michael
    Wang, Anlai
    Guo, Ribo
    Vattay, Anthony
    Hsiao, Kathy
    Yuan, Jing
    Green, John
    Ospina, Beatriz
    Yu, Qunyan
    Ostrom, Lance
    Fordjour, Paul
    Anderson, Dustin L.
    Monahan, John E.
    Kelleher, Joseph F.
    Peukert, Stefan
    Pan, Shifeng
    Wu, Xu
    Maira, Sauveur-Michel
    Garcia-Echeverria, Carlos
    Briggs, Kimberly J.
    Watkins, D. Neil
    Yao, Yung-mae
    Lengauer, Christoph
    Warmuth, Markus
    Sellers, William R.
    Dorsch, Marion
    [J]. SCIENCE TRANSLATIONAL MEDICINE, 2010, 2 (51)
  • [6] Small Molecule Inhibition of GDC-0449 Refractory Smoothened Mutants and Downstream Mechanisms of Drug Resistance
    Dijkgraaf, Gerrit J. P.
    Alicke, Bruno
    Weinmann, Lasse
    Januario, Thomas
    West, Kristina
    Modrusan, Zora
    Burdick, Dan
    Goldsmith, Richard
    Robarge, Kirk
    Sutherlin, Dan
    Scales, Suzie J.
    Gould, Stephen E.
    Yauch, Robert L.
    de Sauvage, Frederic J.
    [J]. CANCER RESEARCH, 2011, 71 (02) : 435 - 444
  • [7] Medulloblastoma: clinicopathological correlates of SHH, WNT, and non-SHH/WNT molecular subgroups
    Ellison, David W.
    Dalton, James
    Kocak, Mehmet
    Nicholson, Sarah Leigh
    Fraga, Charles
    Neale, Geoff
    Kenney, Anna M.
    Brat, Dan J.
    Perry, Arie
    Yong, William H.
    Taylor, Roger E.
    Bailey, Simon
    Clifford, Steven C.
    Gilbertson, Richard J.
    [J]. ACTA NEUROPATHOLOGICA, 2011, 121 (03) : 381 - 396
  • [8] Geoerger B, 2012, J CLIN ONCOL, V30
  • [9] Sonic hedgehog-associated medulloblastoma arising from the cochlear nuclei of the brainstem
    Grammel, Daniel
    Warmuth-Metz, Monika
    von Bueren, Andre O.
    Kool, Marcel
    Pietsch, Torsten
    Kretzschmar, Hans A.
    Rowitch, David H.
    Rutkowski, Stefan
    Pfister, Stefan M.
    Schueller, Ulrich
    [J]. ACTA NEUROPATHOLOGICA, 2012, 123 (04) : 601 - 614
  • [10] Dissecting the genomic complexity underlying medulloblastoma
    Jones, David T. W.
    Jaeger, Natalie
    Kool, Marcel
    Zichner, Thomas
    Hutter, Barbara
    Sultan, Marc
    Cho, Yoon-Jae
    Pugh, Trevor J.
    Hovestadt, Volker
    Stuetz, Adrian M.
    Rausch, Tobias
    Warnatz, Hans-Joerg
    Ryzhova, Marina
    Bender, Sebastian
    Sturm, Dominik
    Pleier, Sabrina
    Cin, Huriye
    Pfaff, Elke
    Sieber, Laura
    Wittmann, Andrea
    Remke, Marc
    Witt, Hendrik
    Hutter, Sonja
    Tzaridis, Theophilos
    Weischenfeldt, Joachim
    Raeder, Benjamin
    Avci, Meryem
    Amstislavskiy, Vyacheslav
    Zapatka, Marc
    Weber, Ursula D.
    Wang, Qi
    Lasitschka, Baerbel
    Bartholomae, Cynthia C.
    Schmidt, Manfred
    von Kalle, Christof
    Ast, Volker
    Lawerenz, Chris
    Eils, Juergen
    Kabbe, Rolf
    Benes, Vladimir
    van Sluis, Peter
    Koster, Jan
    Volckmann, Richard
    Shih, David
    Betts, Matthew J.
    Russell, Robert B.
    Coco, Simona
    Tonini, Gian Paolo
    Schueller, Ulrich
    Hans, Volkmar
    [J]. NATURE, 2012, 488 (7409) : 100 - 105