Countering coordinated amino acid substitutions in phylogenetic analysis

被引：0
|
作者：
Triboy, T. I. [1 ]
Sherbakov, D. Yu. [1 ]
机构：
[1] SB RAS, Limnol Inst, Irkutsk, Russia
来源：
Proceedings of the Fourth International Conference on Bioinformatics of Genome Regulation and Structure, Vol 2 | 2004年
关键词：
evolution; homoplasy; coordinated substitutions; phylogenetic analysis;
D O I：
暂无
中图分类号：
Q5 [生物化学];
学科分类号：
071010 ; 081704 ;
摘要：
Motivation: Countering difficulties in phylogenetic inferences from amino acid sequences which due to homoplasies arising from coordinated evolution in some positions. Results: It is shown that representing of the groups of amino acids which evolve in coordinated fashion by a single residue belonging to the group increases the precision of phylogenetic analysis.
引用
收藏
页码：234 / 236
页数：3
相关论文
共 50 条
  • [21] PHYLOGENETIC ANALYSIS OF DICYEMID MESOZOANS (PHYLUM DICYEMIDA) FROM INNEXIN AMINO ACID SEQUENCES: DICYEMIDS ARE NOT RELATED TO PLATYHELMINTHES
    Suzuki, Takahito G.
    Ogino, Kazutoyo
    Tsuneki, Kazuhiko
    Furuya, Hidetaka
    JOURNAL OF PARASITOLOGY, 2010, 96 (03) : 614 - 625
  • [22] Identification of amino acid substitutions escaping from a broadly neutralizing monoclonal antibody of feline calicivirus
    Fujita, Shigeru
    Koba, Ryota
    Tohya, Yukinobu
    VIRUS RESEARCH, 2022, 318
  • [23] Feature-Based Classification of Amino Acid Substitutions outside Conserved Functional Protein Domains
    Gemovic, Branislava
    Perovic, Vladimir
    Glisic, Sanja
    Veljkovic, Nevena
    SCIENTIFIC WORLD JOURNAL, 2013,
  • [24] Functional dissection of two amino acid substitutions unique to the human FOXP2 protein
    Bornschein, Ulrich
    Zeberg, Hugo
    Enard, Wolfgang
    Hevers, Wulf
    Paeaebo, Svante
    SCIENTIFIC REPORTS, 2023, 13 (01)
  • [25] Effect of co-evolving amino acid residues on topology of phylogenetic trees
    D. Yu. Sherbakov
    T. I. Triboy
    Biochemistry (Moscow), 2007, 72 : 1363 - 1367
  • [26] Effect of co-evolving amino acid residues on topology of phylogenetic trees
    Sherbakov, D. Yu.
    Triboy, T. I.
    BIOCHEMISTRY-MOSCOW, 2007, 72 (12) : 1363 - 1367
  • [27] Phylogenetic inference of changes in amino acid propensities with single-position resolution
    Klink, Galya
    Kalinina, Olga
    Bazykin, Georgii
    PLOS COMPUTATIONAL BIOLOGY, 2022, 18 (02)
  • [28] Comprehensive analysis of the key amino acid substitutions in the polymerase and NP of avian influenza virus that enhance polymerase activity and affect adaptation to mammalian hosts
    Guo, Yanna
    Sun, Tongtong
    Bai, Xuebing
    Liang, Bing
    Deng, Lulu
    Zheng, Yiqing
    Yu, Mengqi
    Li, Yinjing
    Ping, Jihui
    VETERINARY MICROBIOLOGY, 2023, 282
  • [29] Genetic changes associated with glycopeptide resistance in Staphylococcus aureus: predominance of amino acid substitutions in YvqF/VraSR
    Kato, Yoshihisa
    Suzuki, Takahisa
    Ida, Takashi
    Maebashi, Kazunori
    JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY, 2010, 65 (01) : 37 - 45
  • [30] The identification and functional implications of human-specific "fixed" amino acid substitutions in the glutamate receptor family
    Goto, Hiroki
    Watanabe, Kazunori
    Araragi, Naozumi
    Kageyama, Rui
    Tanaka, Kunika
    Kuroki, Yoko
    Toyoda, Atsushi
    Hattori, Masahira
    Sakaki, Yoshiyuki
    Fujiyama, Asao
    Fukumaki, Yasuyuki
    Shibata, Hiroki
    BMC EVOLUTIONARY BIOLOGY, 2009, 9
12345