Comparative analysis to guide quality improvements in proteomics

被引：50
作者：
Mann, Matthias [1 ]
机构：
[1] Max Planck Inst Biochem, Matrinsried, Germany
来源：
NATURE METHODS | 2009年 / 6卷 / 10期
关键词：
MASS-SPECTROMETRY; QUANTITATIVE PROTEOMICS; STATISTICAL-MODEL; PHOSPHOPROTEOME; IDENTIFICATIONS; QUANTIFICATION; DROSOPHILA; PRECISION; DATABASES; ACCURACY;
D O I：
10.1038/nmeth1009-717
中图分类号：
Q5 [生物化学];
学科分类号：
071010 ; 081704 ;
摘要：
The potential of mass spectrometry-based proteomics to advance biology and biomedicine is nearly unlimited but so is its potential for generating bad data. Apart from the pursuit of technological progress in protocols and instruments, stringent comparative analyses of different approaches are critical for fully developing the discipline.
引用
收藏
页码：717 / 719
页数：4
相关论文
共 20 条
  • [1] Multi-site assessment of the precision and reproducibility of multiple reaction monitoring-based measurements of proteins in plasma
    Addona, Terri A.
    Abbatiello, Susan E.
    Schilling, Birgit
    Skates, Steven J.
    Mani, D. R.
    Bunk, David M.
    Spiegelman, Clifford H.
    Zimmerman, Lisa J.
    Ham, Amy-Joan L.
    Keshishian, Hasmik
    Hall, Steven C.
    Allen, Simon
    Blackman, Ronald K.
    Borchers, Christoph H.
    Buck, Charles
    Cardasis, Helene L.
    Cusack, Michael P.
    Dodder, Nathan G.
    Gibson, Bradford W.
    Held, Jason M.
    Hiltke, Tara
    Jackson, Angela
    Johansen, Eric B.
    Kinsinger, Christopher R.
    Li, Jing
    Mesri, Mehdi
    Neubert, Thomas A.
    Niles, Richard K.
    Pulsipher, Trenton C.
    Ransohoff, David
    Rodriguez, Henry
    Rudnick, Paul A.
    Smith, Derek
    Tabb, David L.
    Tegeler, Tony J.
    Variyath, Asokan M.
    Vega-Montoto, Lorenzo J.
    Wahlander, Asa
    Waldemarson, Sofia
    Wang, Mu
    Whiteaker, Jeffrey R.
    Zhao, Lei
    Anderson, N. Leigh
    Fisher, Susan J.
    Liebler, Daniel C.
    Paulovich, Amanda G.
    Regnier, Fred E.
    Tempst, Paul
    Carr, Steven A.
    [J]. NATURE BIOTECHNOLOGY, 2009, 27 (07) : 633 - U85
  • [2] Bell AW, 2009, NAT METHODS, V6, P423, DOI [10.1038/NMETH.1333, 10.1038/nmeth.1333]
  • [3] PhosphoPep-a phosphoproteome resource for systems biology research in Drosophila Kc167 cells
    Bodenmiller, Bernd
    Malmstrom, Johan
    Gerrits, Bertran
    Campbell, David
    Lam, Henry
    Schmidt, Alexander
    Rinner, Oliver
    Mueller, Lukas N.
    Shannon, Paul T.
    Pedrioli, Patrick G.
    Panse, Christian
    Lee, Hoo-Keun
    Schlapbach, Ralph
    Aebersold, Ruedi
    [J]. MOLECULAR SYSTEMS BIOLOGY, 2007, 3 (1)
  • [4] Reproducible isolation of distinct, overlapping segments of the phosphoproteome
    Bodenmiller, Bernd
    Mueller, Lukas N.
    Mueller, Markus
    Domon, Bruno
    Aebersold, Ruedi
    [J]. NATURE METHODS, 2007, 4 (03) : 231 - 237
  • [5] Combined use of RNAi and quantitative proteomics to study gene function in Drosophila
    Bonaldi, Tiziana
    Straub, Tobias
    Cox, Juergen
    Kumar, Chanchal
    Becker, Peter B.
    Mann, Matthias
    [J]. MOLECULAR CELL, 2008, 31 (05) : 762 - 772
  • [6] MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification
    Cox, Juergen
    Mann, Matthias
    [J]. NATURE BIOTECHNOLOGY, 2008, 26 (12) : 1367 - 1372
  • [7] Comprehensive mass-spectrometry-based proteome quantification of haploid versus diploid yeast
    de Godoy, Lyris M. F.
    Olsen, Jesper V.
    Cox, Juergen
    Nielsen, Michael L.
    Hubner, Nina C.
    Froehlich, Florian
    Walther, Tobias C.
    Mann, Matthias
    [J]. NATURE, 2008, 455 (7217) : 1251 - U60
  • [8] Comparative evaluation of mass spectrometry platforms used in large-scale proteomics investigations
    Elias, JE
    Haas, W
    Faherty, BK
    Gygi, SP
    [J]. NATURE METHODS, 2005, 2 (09) : 667 - 675
  • [9] Target-decoy search strategy for increased confidence in large-scale protein identifications by mass spectrometry
    Elias, Joshua E.
    Gygi, Steven P.
    [J]. NATURE METHODS, 2007, 4 (03) : 207 - 214
  • [10] AN APPROACH TO CORRELATE TANDEM MASS-SPECTRAL DATA OF PEPTIDES WITH AMINO-ACID-SEQUENCES IN A PROTEIN DATABASE
    ENG, JK
    MCCORMACK, AL
    YATES, JR
    [J]. JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY, 1994, 5 (11) : 976 - 989
12