RECON: a program for prediction of nucleosome formation potential

被引:35
作者
Levitsky, VG
机构
[1] Novosibirsk State Univ, Novosibirsk 630090, Russia
[2] Russian Acad Sci, Inst Cytol & Genet, Lab Theoret Genet, Novosibirsk 630090, Russia
基金
俄罗斯基础研究基金会;
关键词
D O I
10.1093/nar/gkh482
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The program RECON has been designed for constructing profiles of nucleosome potential, characterizing the probability of nucleosome formation along DNA sequences. The program used for recognition of nucleosome formation sites in genomic DNA sequences. It was developed using discriminant analysis based on a genetic algorithm method utilizing statistics for dinucleotide location within local regions of nucleosome formation sites. The program RECON is available at http://wwwmgs.bionet.nsc.ru/mgs/programs/recon/.
引用
收藏
页码:W346 / W349
页数:4
相关论文
共 17 条
[11]   Nucleosome formation potential of eukaryotic DNA: calculation and promoters analysis [J].
Levitsky, VG ;
Podkolodnaya, OA ;
Kolchanov, NA ;
Podkolodny, NL .
BIOINFORMATICS, 2001, 17 (11) :998-1010
[12]   Nucleosome formation potential of exons, introns, and Alu repeats [J].
Levitsky, VG ;
Podkolodnaya, OA ;
Kolchanov, NA ;
Podkolodny, NL .
BIOINFORMATICS, 2001, 17 (11) :1062-1064
[13]   Crystal structure of the nucleosome core particle at 2.8 angstrom resolution [J].
Luger, K ;
Mader, AW ;
Richmond, RK ;
Sargent, DF ;
Richmond, TJ .
NATURE, 1997, 389 (6648) :251-260
[14]  
Podkolodnaya O. A., 2001, Molekulyarnaya Biologiya (Moscow), V35, P943
[15]  
Richmond TJ, 2000, CHROMATIN STRUCTURE, P1
[16]  
Trifonov EN, 1997, MOL BIOL+, V31, P647
[17]   Identification and characterization of genomic nucleosome-positioning sequences [J].
Widlund, HR ;
Cao, H ;
Simonsson, S ;
Magnusson, E ;
Simonsson, T ;
Nielsen, PE ;
Kahn, JD ;
Crothers, DM ;
Kubista, M .
JOURNAL OF MOLECULAR BIOLOGY, 1997, 267 (04) :807-817