Clinical validation of the detection of KRAS and BRAF mutations from circulating tumor DNA

被引:512
作者
Thierry, Alain R. [1 ,2 ]
Mouliere, Florent [1 ,2 ]
El Messaoudi, Safia [1 ,2 ]
Mollevi, Caroline [3 ]
Lopez-Crapez, Evelyne [4 ]
Rolet, Fanny [2 ]
Gillet, Brigitte [5 ]
Gongora, Celine [1 ]
Dechelotte, Pierre [6 ]
Robert, Bruno [1 ]
Del Rio, Maguy [1 ]
Lamy, Pierre-Jean [4 ]
Bibeau, Frederic [7 ]
Nouaille, Michelle [8 ]
Loriot, Virginie [9 ]
Jarrousse, Anne-Sophie [6 ]
Molina, Franck [2 ]
Mathonnet, Muriel [8 ]
Pezet, Denis [5 ]
Ychou, Marc [9 ]
机构
[1] Inst Rech Cancerol Montpellier, INSERM U896, Montpellier, France
[2] CAP DELTA, Sysdiag CNRS UMR3145, Montpellier, France
[3] Inst Canc Montpellier, Unite Biostat, Montpellier, France
[4] Inst Canc Montpellier, Lab Biol Specialisee, Montpellier, France
[5] Univ Auvergne, UMR Unite Inserm, Serv Chirurg Digest,U1071, Unite Oncol Digest,Ctr Hosp Univ Clermont Ferrand, Clermont Ferrand, France
[6] Ctr Hosp Univ Clermont Ferrand, Unite Oncol Mol, Clermont Ferrand, France
[7] Inst Canc Montpellier, Unite Biopathol, Serv Pathol, Montpellier, France
[8] Ctr Hosp Univ Limoges, Serv Chirurg Digest, Ctr Invest Clin, INSERM 0801, Limoges, France
[9] Inst Canc Montpellier, Serv Chirurg Digest, Montpellier, France
关键词
METASTATIC COLORECTAL-CANCER; K-RAS MUTATIONS; CELL-FREE DNA; ACQUIRED-RESISTANCE; PROGNOSTIC VALUE; MUTANT-DNA; CETUXIMAB; PLASMA; PROPORTION; PREDICTOR;
D O I
10.1038/nm.3511
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Assessment of KRAS status is mandatory in patients with metastatic colorectal cancer (mCRC) before applying targeted therapy. We describe here a blinded prospective study to compare KRAS and BRAF mutation status data obtained from the analysis of tumor tissue by routine gold-standard methods and of plasma DNA using a quantitative PCR-based method specifically designed to analyze circulating cell-free DNA (cfDNA). The mutation status was determined by both methods from 106 patient samples. cfDNA analysis showed 100% specificity and sensitivity for the BRAF V600E mutation. For the seven tested KRAS point mutations, the method exhibited 98% specificity and 92% sensitivity with a concordance value of 96%. Mutation load, expressed as the proportion of mutant alleles in cfDNA, was highly variable (0.5-64.1%, median 10.5%) among mutated samples. CfDNA was detected in 100% of patients with mCRC. This study shows that liquid biopsy through cfDNA analysis could advantageously replace tumor-section analysis and expand the scope of personalized medicine for patients with cancer.
引用
收藏
页码:430 / +
页数:7
相关论文
共 42 条
[1]   Wild-type KRAS is required for panitumumab efficacy in patients with metastatic colorectal cancer [J].
Amado, Rafael G. ;
Wolf, Michael ;
Peeters, Marc ;
Van Cutsem, Eric ;
Siena, Salvatore ;
Freeman, Daniel J. ;
Juan, Todd ;
Sikorski, Robert ;
Suggs, Sid ;
Radinsky, Robert ;
Patterson, Scott D. ;
Chang, David D. .
JOURNAL OF CLINICAL ONCOLOGY, 2008, 26 (10) :1626-1634
[2]  
Artru P, 2012, J CLIN ONCOL, V30
[3]   KRAS mutations detected by the amplification refractory mutation system-Scorpion assays strongly correlate with therapeutic effect of cetuximab [J].
Bando, H. ;
Yoshino, T. ;
Tsuchihara, K. ;
Ogasawara, N. ;
Fuse, N. ;
Kojima, T. ;
Tahara, M. ;
Kojima, M. ;
Kaneko, K. ;
Doi, T. ;
Ochiai, A. ;
Esumi, H. ;
Ohtsu, A. .
BRITISH JOURNAL OF CANCER, 2011, 105 (03) :403-406
[4]   Impact of FcγRIIa-FcγRIIIa Polymorphisms and KRAS Mutations on the Clinical Outcome of Patients With Metastatic Colorectal Cancer Treated With Cetuximab Plus Irinotecan [J].
Bibeau, Frederic ;
Lopez-Crapez, Evelyne ;
Di Fiore, Frederic ;
Thezenas, Simon ;
Ychou, Marc ;
Blanchard, France ;
Lamy, Aude ;
Penault-Llorca, Frederique ;
Frebourg, Thierry ;
Michel, Pierre ;
Sabourin, Jean-Christophe ;
Boissiere-Michot, Florence .
JOURNAL OF CLINICAL ONCOLOGY, 2009, 27 (07) :1122-1129
[5]   Detection of PIK3CA mutations in circulating free DNA in patients with breast cancer [J].
Board, Ruth E. ;
Wardley, Andrew M. ;
Dixon, J. Michael ;
Armstrong, Anne C. ;
Howell, Sacha ;
Renshaw, Lorna ;
Donald, Emma ;
Greystoke, Alastair ;
Ranson, Malcolm ;
Hughes, Andrew ;
Dive, Caroline .
BREAST CANCER RESEARCH AND TREATMENT, 2010, 120 (02) :461-467
[6]   KRAS genotyping in rectal adenocarcinoma specimens with low tumor cellularity after neoadjuvant treatment [J].
Boissiere-Michot, Florence ;
Lopez-Crapez, Evelyne ;
Frugier, Helene ;
Berthe, Marie-Laurence ;
Ho-Pun-Cheung, Alexandre ;
Assenat, Eric ;
Maudelonde, Thierry ;
Lamy, Pierre-Jean ;
Bibeau, Frederic .
MODERN PATHOLOGY, 2012, 25 (05) :731-739
[7]   The MIQE Guidelines: Minimum Information for Publication of Quantitative Real-Time PCR Experiments [J].
Bustin, Stephen A. ;
Benes, Vladimir ;
Garson, Jeremy A. ;
Hellemans, Jan ;
Huggett, Jim ;
Kubista, Mikael ;
Mueller, Reinhold ;
Nolan, Tania ;
Pfaffl, Michael W. ;
Shipley, Gregory L. ;
Vandesompele, Jo ;
Wittwer, Carl T. .
CLINICAL CHEMISTRY, 2009, 55 (04) :611-622
[8]   A comparison of three methods for detecting KRAS mutations in formalin-fixed colorectal cancer specimens [J].
de Castro, D. Gonzalez ;
Angulo, B. ;
Gomez, B. ;
Mair, D. ;
Martinez, R. ;
Suarez-Gauthier, A. ;
Shieh, F. ;
Velez, M. ;
Brophy, V. H. ;
Lawrence, H. J. ;
Lopez-Rios, F. .
BRITISH JOURNAL OF CANCER, 2012, 107 (02) :345-351
[9]   The molecular evolution of acquired resistance to targeted EGFR blockade in colorectal cancers [J].
Diaz, Luis A., Jr. ;
Williams, Richard T. ;
Wu, Jian ;
Kinde, Isaac ;
Hecht, J. Randolph ;
Berlin, Jordan ;
Allen, Benjamin ;
Bozic, Ivana ;
Reiter, Johannes G. ;
Nowak, Martin A. ;
Kinzler, Kenneth W. ;
Oliner, Kelly S. ;
Vogelstein, Bert .
NATURE, 2012, 486 (7404) :537-540
[10]   Circulating mutant DNA to assess tumor dynamics [J].
Diehl, Frank ;
Schmidt, Kerstin ;
Choti, Michael A. ;
Romans, Katharine ;
Goodman, Steven ;
Li, Meng ;
Thornton, Katherine ;
Agrawal, Nishant ;
Sokoll, Lori ;
Szabo, Steve A. ;
Kinzler, Kenneth W. ;
Vogelstein, Bert ;
Diaz, Luis A., Jr. .
NATURE MEDICINE, 2008, 14 (09) :985-990