Thymine distribution in genes provides novel insight into the functional significance of the proteome of the malaria parasite Plasmodium falciparum 3D7

被引:2
作者
Palanisamy, Balamurugan [1 ]
Ekambaram, Rajasekaran [1 ]
Heese, Klaus [2 ]
机构
[1] Karunya Univ, Sch Biotechnol & Hlth Sci, Coimbatore 641114, Tamil Nadu, India
[2] Hanyang Univ, Grad Sch Biomed Sci & Engn, Seoul 133791, South Korea
关键词
DRUG TARGET; POLYMORPHISMS; LOCALIZATION; DERIVATIVES; PROTEINS; MACHINE;
D O I
10.1093/bioinformatics/btt587
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
Plasmodium falciparum (Pf)-mediated malaria is one of the most devastating diseases in the world, and the search for suitable antimalarial drugs remains an extraordinary challenge for scientists working in this area. Novel unconventional approaches could reveal new potential targets that may be useful for the treatment of malaria. We used a bioinformatics approach to analyze the entire genome of the Pf3D7 strain. Because the carbon (C-) content is a pivotal parameter that determines the hydrophobicity of a protein, which in turn controls protein folding and function, we analyzed the entire Pf3D7 proteome based on the gene's thymine (T)-controlled amino acid expression. Our data disclose a total of 14 proteins encoded by chromosome-4 and chromosome-9 that have an outstanding T-encoded and C-controlled hydrophobic character. The identification of these proteins could open new pivotal drug-targeting avenues.
引用
收藏
页码:597 / 600
页数:4
相关论文
共 33 条
[1]   Hydrophobic, hydrophilic, and charged amino acid networks within protein [J].
Aftabuddin, Md. ;
Kundu, S. .
BIOPHYSICAL JOURNAL, 2007, 93 (01) :225-231
[2]   Novel RuvB nuclear ATPase is specific to intraerythrocytic mitosis during schizogony of Plasmodium falciparum [J].
Ahmad, Moaz ;
Singh, Shailja ;
Afrin, Farhat ;
Tuteja, Renu .
MOLECULAR AND BIOCHEMICAL PARASITOLOGY, 2012, 185 (01) :58-65
[3]   Chemosensitization potential of P-glycoprotein inhibitors in malaria parasites [J].
Alcantara, Laura M. ;
Kim, Junwon ;
Moraes, Carolina B. ;
Franco, Caio H. ;
Franzoi, Kathrin D. ;
Lee, Sukjun ;
Freitas-Junior, Lucio H. ;
Ayong, Lawrence S. .
EXPERIMENTAL PARASITOLOGY, 2013, 134 (02) :235-243
[4]  
[Anonymous], 2010, INFORMATION
[5]  
Ansari Abulaish, 2012, Commun Integr Biol, V5, P607, DOI 10.4161/cib.21759
[6]   A Revised Timeline for the Origin of Plasmodium falciparum as a Human Pathogen [J].
Baron, Jason M. ;
Higgins, John M. ;
Dzik, Walter H. .
JOURNAL OF MOLECULAR EVOLUTION, 2011, 73 (5-6) :297-304
[7]   Phosphoethanolamine methyltransferases in phosphocholine biosynthesis: functions and potential for antiparasite therapy [J].
Bobenchik, April M. ;
Augagneur, Yoann ;
Hao, Bing ;
Hoch, Jeffrey C. ;
Ben Mamoun, Choukri .
FEMS MICROBIOLOGY REVIEWS, 2011, 35 (04) :609-619
[8]   Malaria resurgence: a systematic review and assessment of its causes [J].
Cohen, Justin M. ;
Smith, David L. ;
Cotter, Chris ;
Ward, Abigail ;
Yamey, Gavin ;
Sabot, Oliver J. ;
Moonen, Bruno .
MALARIA JOURNAL, 2012, 11
[9]   A newly discovered protein export machine in malaria parasites [J].
de Koning-Ward, Tania F. ;
Gilson, Paul R. ;
Boddey, Justin A. ;
Rug, Melanie ;
Smith, Brian J. ;
Papenfuss, Anthony T. ;
Sanders, Paul R. ;
Lundie, Rachel J. ;
Maier, Alexander G. ;
Cowman, Alan F. ;
Crabb, Brendan S. .
NATURE, 2009, 459 (7249) :945-U66
[10]   The role of hydrophobic interactions in initiation and propagation of protein folding [J].
Dyson, H. Jane ;
Wright, Peter E. ;
Scheraga, Harold A. .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2006, 103 (35) :13057-13061