Dynamical interaction between protein molecules and their hydration shell

被引:3
|
作者
Parak, Fritz G. [1 ]
机构
[1] Tech Univ Munich, Phys Dept E 17, D-85747 Garching, Germany
关键词
Protein structure and dynamics; Neutron scattering; Mossbauer spectroscopy; NEUTRON-SCATTERING; LIGAND-BINDING; MYOGLOBIN; WATER; CRYSTALLOGRAPHY; RESOLUTION; HYDROGEN; MOTIONS;
D O I
10.1016/j.chemphys.2013.06.009
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
The hydration shell of a protein molecule influences its functional important dynamics while the protein molecule influences the hydration shell. Neutron scattering experiments have been used to separate both effects. Neutron crystallography is used to determine the positions and the mean square displacements, < x(2)>, of the protons in met-myoglobin. Mean square displacements obtained by incoherent neutron scattering stem from motions occurring on a time scale faster than 100 ps. The combination of the two experimental results allows to separate three types of protein protons. The < x(2)>-values of lysine protons stem from motions faster than 100 ps. Half of the < x(2)>-values of methyl protons is caused by motions faster than 100 ps, the other halve comes from slower motions. The backbone protons move slower than 100 ps. Incoherent neutron scattering on a perdeuterated myoglobin with a (H2O)-H-1 hydration shell allowed the study of the diffusion in this shell. (C) 2013 Elsevier B. V. All rights reserved.
引用
收藏
页码:45 / 49
页数:5
相关论文
共 50 条
  • [31] FREE-ENERGIES OF HYDRATION OF SOLUTE MOLECULES .3. APPLICATION OF THE HYDRATION SHELL-MODEL TO CHARGED ORGANIC-MOLECULES
    KANG, YK
    NEMETHY, G
    SCHERAGA, HA
    JOURNAL OF PHYSICAL CHEMISTRY, 1987, 91 (15): : 4118 - 4120
  • [32] FREE-ENERGIES OF HYDRATION OF SOLUTE MOLECULES .2. APPLICATION OF THE HYDRATION SHELL-MODEL TO NONIONIC ORGANIC-MOLECULES
    KANG, YK
    NEMETHY, G
    SCHERAGA, HA
    JOURNAL OF PHYSICAL CHEMISTRY, 1987, 91 (15): : 4109 - 4117
  • [33] The van der Waals interaction between protein molecules in an electrolyte solution
    Song, XY
    Zhao, XF
    JOURNAL OF CHEMICAL PHYSICS, 2004, 120 (04): : 2005 - 2009
  • [34] Tuning of Polyoxopalladate Macroanionic Hydration Shell via Countercation Interaction
    He, Jiazhi
    Li, Hui
    Yang, Peng
    Haso, Fadi
    Wu, Jiayingzi
    Li, Tao
    Kortz, Ulrich
    Liu, Tianbo
    CHEMISTRY-A EUROPEAN JOURNAL, 2018, 24 (12) : 3052 - 3057
  • [35] Hydration-dependent dynamical transition in protein:: Protein interactions at ≈240 k
    Kurkal-Siebert, Vandana
    Agarwal, Ritesh
    Smith, Jeremy C.
    PHYSICAL REVIEW LETTERS, 2008, 100 (13)
  • [36] HYDRATION OF POLAR ORGANIC-MOLECULES - THE INTERACTION OF ACETONITRILE WITH WATER
    DAMEWOOD, JR
    KUMPF, RA
    JOURNAL OF PHYSICAL CHEMISTRY, 1987, 91 (12): : 3449 - 3452
  • [37] A model for hydration interactions between apoferritin molecules in solution
    Paunov, VN
    Kaler, EW
    Sandler, SL
    Petsev, DN
    JOURNAL OF COLLOID AND INTERFACE SCIENCE, 2001, 240 (02) : 640 - 643
  • [38] FREE-ENERGIES OF HYDRATION OF SOLUTE MOLECULES .4. REVISED TREATMENT OF THE HYDRATION SHELL-MODEL
    KANG, YK
    GIBSON, KD
    NEMETHY, G
    SCHERAGA, HA
    JOURNAL OF PHYSICAL CHEMISTRY, 1988, 92 (16): : 4739 - 4742
  • [39] Local Order, Energy, and Mobility of Water Molecules in the Hydration Shell of Small Peptides
    Agarwal, Manish
    Kushwaha, Hemant R.
    Chakravarty, Charusita
    JOURNAL OF PHYSICAL CHEMISTRY B, 2010, 114 (01): : 651 - 659
  • [40] Vibrations of Water Molecules in Monosaccharide Hydration Shell by DFT-MD Studies
    Tomobe, Katsufumi
    Iijima, Takashi
    Yamamoto, Eiji
    Yasui, Masato
    Yasuoka, Kenji
    BIOPHYSICAL JOURNAL, 2016, 110 (03) : 645A - 646A