The how and why of branch support and partitioned branch support, with a new index to assess partition incongruence

被引:29
作者
Brower, Andrew V. Z. [1 ]
机构
[1] Oregon State Univ, Dept Zool, Corvallis, OR 97331 USA
关键词
D O I
10.1111/j.1096-0031.2006.00113.x
中图分类号
Q [生物科学];
学科分类号
07 ; 0710 ; 09 ;
摘要
An introduction and step-by-step guide to the calculation of branch support (BS) and partitioned branch support (PBS) is provided, along with a new summary measure of conflict among data partitions, the partition congruence index (PCI). Patterns of PCI vs. BS are compared for two data matrices from butterflies. PCI is a close mirror of BS unless BY is relatively low and there is a lot of conflict among data partitions, in which case PCI becomes negative. Some theoretical concerns relating to PBS are noted. (c) The Willi Hennig Society 2006.
引用
收藏
页码:378 / 386
页数:9
相关论文
共 34 条
[1]  
[Anonymous], 1999, TREEROT VERSION 2
[2]   Multiple sources of character information and the phylogeny of Hawaiian Drosophilids [J].
Baker, RH ;
DeSalle, R .
SYSTEMATIC BIOLOGY, 1997, 46 (04) :654-673
[3]   Assessing the relative contribution of molecular and morphological characters in simultaneous analysis trees [J].
Baker, RH ;
Yu, XB ;
DeSalle, R .
MOLECULAR PHYLOGENETICS AND EVOLUTION, 1998, 9 (03) :427-436
[4]   Phylogenetic utility of different types of molecular data used to infer evolutionary relationships among stalk-eyed flies (Diopsidae) [J].
Baker, RH ;
Wilkinson, GS ;
DeSalle, R .
SYSTEMATIC BIOLOGY, 2001, 50 (01) :87-105
[5]  
BREMER K, 1988, EVOLUTION, V42, P795, DOI [10.2307/2408870, 10.1111/j.1558-5646.1988.tb02497.x]
[6]  
BREMER K, 1994, CLADISTICS, V10, P295, DOI 10.1006/clad.1994.1019
[7]   Phylogenetic relationships among the Ithomiini (Lepidoptera: Nymphalidae) inferred from one mitochondrial and two nuclear gene regions [J].
Brower, AVZ ;
Freitas, AVL ;
Lee, MM ;
Silva-Brandao, KL ;
Whinnett, A ;
Willmott, KR .
SYSTEMATIC ENTOMOLOGY, 2006, 31 (02) :288-301
[8]   Gene trees, species trees, and systematics: A cladistic perspective [J].
Brower, AVZ ;
DeSalle, R ;
Vogler, A .
ANNUAL REVIEW OF ECOLOGY AND SYSTEMATICS, 1996, 27 :423-450
[9]   PARTITIONING AND COMBINING DATA IN PHYLOGENETIC ANALYSIS [J].
BULL, JJ ;
HUELSENBECK, JP ;
CUNNINGHAM, CW ;
SWOFFORD, DL ;
WADDELL, PJ .
SYSTEMATIC BIOLOGY, 1993, 42 (03) :384-397