Cross-talk Calibrating Based on Correlation Analysis in High-throughput Genome Sequencing

被引:0
作者
Ye, Bing-gang [1 ]
Wu, Xiao-ming [1 ]
Li Jing-xiang [2 ]
Yan, Zhou [2 ]
Wang De-peng [2 ]
机构
[1] South China Univ Technol, Sch Biosci & Bioengn, Guangzhou, Guangdong, Peoples R China
[2] Shenzhen BGI, Shenzhen, Peoples R China
来源
2010 4TH INTERNATIONAL CONFERENCE ON BIOINFORMATICS AND BIOMEDICAL ENGINEERING (ICBBE 2010) | 2010年
关键词
High-throughput; Sequencing; Cross-talk; correlation analysis; MATRIX; SYSTEM;
D O I
暂无
中图分类号
R318 [生物医学工程];
学科分类号
0831 ;
摘要
The images, in high-throughput genome sequencing of sequencing by synthesize, consist of A, C, G, T base fluorescence images, and the fluorophore emission spectra partially overlap, which causes cross-talk problem. This paper presents a method of correlation analysis, construct the calibration matrix to eliminate interference of the fluorophore. The experiment result shows the method provided in this article is effective to correct cross-talk influence, and get the deconvolution of the clusters signal.
引用
收藏
页数:4
相关论文
共 50 条
[41]   Advances in high-throughput proteomic analysis [J].
Wu Qiong ;
Sui Xintong ;
Tian Ruijun .
CHINESE JOURNAL OF CHROMATOGRAPHY, 2021, 39 (02) :112-117
[42]   Biological ingredient analysis of traditional Chinese medicine preparation based on high-throughput sequencing: the story for Liuwei Dihuang Wan [J].
Cheng, Xinwei ;
Su, Xiaoquan ;
Chen, Xiaohua ;
Zhao, Huanxin ;
Bo, Cunpei ;
Xu, Jian ;
Bai, Hong ;
Ning, Kang .
SCIENTIFIC REPORTS, 2014, 4
[44]   Generalized Schemes for High-Throughput Manipulation of the Desulfovibrio vulgaris Genome [J].
Chhabra, S. R. ;
Butland, G. ;
Elias, D. A. ;
Chandonia, J. -M. ;
Fok, O. -Y. ;
Juba, T. R. ;
Gorur, A. ;
Allen, S. ;
Leung, C. M. ;
Keller, K. L. ;
Reveco, S. ;
Zane, G. M. ;
Semkiw, E. ;
Prathapam, R. ;
Gold, B. ;
Singer, M. ;
Ouellet, M. ;
Szakal, E. D. ;
Jorgens, D. ;
Price, M. N. ;
Witkowska, H. E. ;
Beller, H. R. ;
Arkin, A. P. ;
Hazen, T. C. ;
Biggin, M. D. ;
Auer, M. ;
Wall, J. D. ;
Keasling, J. D. .
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2011, 77 (21) :7595-7604
[45]   High-throughput genome scanning in constant tension fluidic funnels [J].
Griffis, Joshua W. ;
Protozanova, Ekaterina ;
Cameron, Douglas B. ;
Meltzer, Robert H. .
LAB ON A CHIP, 2013, 13 (02) :240-251
[46]   Analysis of dominant microorganisms and core enzymes in Qingke Baijiu Daqu by high-throughput sequencing and proteomics [J].
Chen, Lihua ;
Peng, Qinghua ;
Chen, Yuhang ;
Che, Fuhong ;
Chen, Zhanxiu ;
Feng, Shengbao .
FOOD RESEARCH INTERNATIONAL, 2025, 204
[47]   naiveBayesCall: An Efficient Model-Based Base-Calling Algorithm for High-Throughput Sequencing [J].
Kao, Wei-Chun ;
Song, Yun S. .
JOURNAL OF COMPUTATIONAL BIOLOGY, 2011, 18 (03) :365-377
[48]   naiveBayesCall: An Efficient Model-Based Base-Calling Algorithm for High-Throughput Sequencing [J].
Kao, Wei-Chun ;
Song, Yuri S. .
RESEARCH IN COMPUTATIONAL MOLECULAR BIOLOGY, PROCEEDINGS, 2010, 6044 :233-247
[49]   Droplet-based high-throughput single microbe RNA sequencing by smRandom-seq [J].
Xu, Ziye ;
Wang, Yuting ;
Sheng, Kuanwei ;
Rosenthal, Raoul ;
Liu, Nan ;
Hua, Xiaoting ;
Zhang, Tianyu ;
Chen, Jiaye ;
Song, Mengdi ;
Lv, Yuexiao ;
Zhang, Shunji ;
Huang, Yingjuan ;
Wang, Zhaolun ;
Cao, Ting ;
Shen, Yifei ;
Jiang, Yan ;
Yu, Yunsong ;
Chen, Yu ;
Guo, Guoji ;
Yin, Peng ;
Weitz, David A. ;
Wang, Yongcheng .
NATURE COMMUNICATIONS, 2023, 14 (01)
[50]   High-Throughput Microfluidic Particle Counter Based on Optical Absorption [J].
Xian, Qingyue ;
Luo, Xiao ;
Zhang, Jie ;
Wong, Yu Ching ;
Yang, Siyu ;
Wen, Weijia .
ACS BIOMATERIALS SCIENCE & ENGINEERING, 2024, 10 (06) :4085-4092