DRF90: a polarizable force field

被引:58
|
作者
Swart, M. [1 ]
van Duijnen, P. Th. [1 ]
机构
[1] MSC Univ Groningen, NL-9747 AG Groningen, Netherlands
关键词
polarizability; force field; geometry optimization; molecular dynamics simulations;
D O I
10.1080/08927020600631270
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
The direct reaction field (DRF) approach has proven to be a useful tool to investigate the influence of solvents on the quantum/classical behaviour of solute molecules. In this paper, we report the latest extension of this DRF approach, which consists of the gradient of the completely classical energy expressions of this otherwise QM/MM method. They can be used in (completely classical) molecular dynamics (MD) simulations and geometry optimizations, that can be followed by a number of single point QM/MM calculations on configurations obtained in these simulations/optimizations. We report all energy and gradient expressions, and results for a number of interesting (model) systems. They include geometry optimization of the benzene dimer as well as MD simulations of some solvents. The most stable configuration for the benzene dimer is shown to be the parallel-displaced form, which is slightly more stable (0.3 kcal/mol) than the T-shaped dimer.
引用
收藏
页码:471 / 484
页数:14
相关论文
共 50 条
  • [21] Direct Wolf summation of a polarizable force field for silica
    Brommer, Peter
    Beck, Philipp
    Chatzopoulos, Andreas
    Gaehler, Franz
    Roth, Johannes
    Trebin, Hans-Rainer
    JOURNAL OF CHEMICAL PHYSICS, 2010, 132 (19):
  • [22] Modeling halogen compounds with a polarizable multipole force field
    Ren, Pengyu
    Mu, Xiaojia
    Wang, Qiantao
    Wang, Lee-Ping
    ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, 2013, 246
  • [23] Polarizable Force Field with a σ-Hole for Liquid and Aqueous Bromomethane
    Adluri, Archita N. S.
    Murphy, Jennifer N.
    Tozer, Tiffany
    Rowley, Christopher N.
    JOURNAL OF PHYSICAL CHEMISTRY B, 2015, 119 (42): : 13422 - 13432
  • [24] Polarizable Force Field for Protein with Charge Response Kernel
    Isegawa, Miho
    Kato, Shigeki
    JOURNAL OF CHEMICAL THEORY AND COMPUTATION, 2009, 5 (10) : 2809 - 2821
  • [25] Ab initio based polarizable force field parametrization
    Masia, Marco
    JOURNAL OF CHEMICAL PHYSICS, 2008, 128 (18):
  • [26] Protein structure refinement with a polarizable force field and PME
    LuCore, Stephen
    Park, Jooyeon
    Powers, Kyle
    Li, Shuxiang
    Fenn, Timothy D.
    Schnieders, Michael J.
    ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, 2013, 246
  • [27] A quantum mechanical polarizable force field for biomolecular interactions
    Donchev, AG
    Ozrin, VD
    Subbotin, MV
    Tarasov, OV
    Tarasov, VI
    PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2005, 102 (22) : 7829 - 7834
  • [28] Optimization of the CHARMM Drude polarizable force field for DNA
    Savelyev, Alexey
    Baker, Chris
    Mackerell, Alexander
    ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, 2012, 244
  • [29] Incorporating Neural Networks into the AMOEBA Polarizable Force Field
    Wang, Yanxing
    Inizan, Theo Jaffrelot
    Liu, Chengwen
    Piquemal, Jean-Philip
    Ren, Pengyu
    JOURNAL OF PHYSICAL CHEMISTRY B, 2024, 128 (10): : 2381 - 2388
  • [30] Parameterization to NDDO-based polarizable force field
    Heike Thomas
    Matthias Hennemann
    Stefan Guessregen
    Timothy Clark
    Journal of Cheminformatics, 6 (Suppl 1)