Critical slowing down in biochemical networks with feedback
被引:8
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作者:
Byrd, Tommy A.
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机构:
Purdue Univ, Dept Phys & Astron, W Lafayette, IN 47907 USAPurdue Univ, Dept Phys & Astron, W Lafayette, IN 47907 USA
Byrd, Tommy A.
[1
]
Erez, Amir
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机构:
Princeton Univ, Dept Mol Biol, Princeton, NJ 08544 USAPurdue Univ, Dept Phys & Astron, W Lafayette, IN 47907 USA
Erez, Amir
[2
]
Vogel, Robert M.
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机构:
IBM TJ Watson Res Ctr, Yorktown Hts, NY 10598 USAPurdue Univ, Dept Phys & Astron, W Lafayette, IN 47907 USA
Vogel, Robert M.
[3
]
Peterson, Curtis
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机构:
Purdue Univ, Dept Phys & Astron, W Lafayette, IN 47907 USA
Arizona State Univ, Dept Phys, Tempe, AZ 85287 USA
Arizona State Univ, Sch Math & Stat Sci, Tempe, AZ 85287 USAPurdue Univ, Dept Phys & Astron, W Lafayette, IN 47907 USA
Peterson, Curtis
[1
,4
,5
]
Vennettilli, Michael
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机构:
Purdue Univ, Dept Phys & Astron, W Lafayette, IN 47907 USAPurdue Univ, Dept Phys & Astron, W Lafayette, IN 47907 USA
Vennettilli, Michael
[1
]
Altan-Bonnet, Gregoire
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机构:
NCI, Immunodynam Grp, Canc & Inflammat Program, NIH, Bethesda, MD 20814 USAPurdue Univ, Dept Phys & Astron, W Lafayette, IN 47907 USA
Altan-Bonnet, Gregoire
[6
]
Mugler, Andrew
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机构:
Purdue Univ, Dept Phys & Astron, W Lafayette, IN 47907 USAPurdue Univ, Dept Phys & Astron, W Lafayette, IN 47907 USA
Mugler, Andrew
[1
]
机构:
[1] Purdue Univ, Dept Phys & Astron, W Lafayette, IN 47907 USA
[2] Princeton Univ, Dept Mol Biol, Princeton, NJ 08544 USA
[3] IBM TJ Watson Res Ctr, Yorktown Hts, NY 10598 USA
[4] Arizona State Univ, Dept Phys, Tempe, AZ 85287 USA
[5] Arizona State Univ, Sch Math & Stat Sci, Tempe, AZ 85287 USA
Near a bifurcation point, the response time of a system is expected to diverge due to the phenomenon of critical slowing down. We investigate critical slowing down in well-mixed stochastic models of biochemical feedback by exploiting a mapping to the mean-field Ising universality class. We analyze the responses to a sudden quench and to continuous driving in the model parameters. In the latter case, we demonstrate that our class of models exhibits the Kibble-Zurek collapse, which predicts the scaling of hysteresis in cellular responses to gradual perturbations. We discuss the implications of our results in terms of the tradeoff between a precise and a fast response. Finally, we use our mapping to quantify critical slowing down in T cells, where the addition of a drug is equivalent to a sudden quench in parameter space.
机构:
China Univ Min & Technol, Key Lab Gas & Fire Control Coal Mines, Xuzhou 221116, Jiangsu, Peoples R China
China Univ Min & Technol, State Key Lab Coal Resources & Safe Min, Xuzhou 221116, Jiangsu, Peoples R China
China Univ Min & Technol, Sch Safety Engn, Xuzhou 221116, Jiangsu, Peoples R ChinaChina Univ Min & Technol, Key Lab Gas & Fire Control Coal Mines, Xuzhou 221116, Jiangsu, Peoples R China
Wei, Yang
Li, Zhonghui
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机构:
China Univ Min & Technol, Key Lab Gas & Fire Control Coal Mines, Xuzhou 221116, Jiangsu, Peoples R China
China Univ Min & Technol, State Key Lab Coal Resources & Safe Min, Xuzhou 221116, Jiangsu, Peoples R China
China Univ Min & Technol, Sch Safety Engn, Xuzhou 221116, Jiangsu, Peoples R ChinaChina Univ Min & Technol, Key Lab Gas & Fire Control Coal Mines, Xuzhou 221116, Jiangsu, Peoples R China
Li, Zhonghui
Kong, Xiangguo
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机构:
China Univ Min & Technol, Key Lab Gas & Fire Control Coal Mines, Xuzhou 221116, Jiangsu, Peoples R China
China Univ Min & Technol, State Key Lab Coal Resources & Safe Min, Xuzhou 221116, Jiangsu, Peoples R China
China Univ Min & Technol, Sch Safety Engn, Xuzhou 221116, Jiangsu, Peoples R ChinaChina Univ Min & Technol, Key Lab Gas & Fire Control Coal Mines, Xuzhou 221116, Jiangsu, Peoples R China
Kong, Xiangguo
Zhang, Zhibo
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机构:
China Univ Min & Technol, Key Lab Gas & Fire Control Coal Mines, Xuzhou 221116, Jiangsu, Peoples R China
China Univ Min & Technol, State Key Lab Coal Resources & Safe Min, Xuzhou 221116, Jiangsu, Peoples R China
China Univ Min & Technol, Sch Safety Engn, Xuzhou 221116, Jiangsu, Peoples R ChinaChina Univ Min & Technol, Key Lab Gas & Fire Control Coal Mines, Xuzhou 221116, Jiangsu, Peoples R China
Zhang, Zhibo
Cheng, Fuqi
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h-index: 0
机构:
China Univ Min & Technol, Key Lab Gas & Fire Control Coal Mines, Xuzhou 221116, Jiangsu, Peoples R China
China Univ Min & Technol, State Key Lab Coal Resources & Safe Min, Xuzhou 221116, Jiangsu, Peoples R China
China Univ Min & Technol, Sch Safety Engn, Xuzhou 221116, Jiangsu, Peoples R ChinaChina Univ Min & Technol, Key Lab Gas & Fire Control Coal Mines, Xuzhou 221116, Jiangsu, Peoples R China
Cheng, Fuqi
Zheng, Xiangxin
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机构:
China Univ Min & Technol, Key Lab Gas & Fire Control Coal Mines, Xuzhou 221116, Jiangsu, Peoples R China
China Univ Min & Technol, State Key Lab Coal Resources & Safe Min, Xuzhou 221116, Jiangsu, Peoples R China
China Univ Min & Technol, Sch Safety Engn, Xuzhou 221116, Jiangsu, Peoples R ChinaChina Univ Min & Technol, Key Lab Gas & Fire Control Coal Mines, Xuzhou 221116, Jiangsu, Peoples R China
Zheng, Xiangxin
Wang, Cong
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机构:
China Univ Min & Technol, Key Lab Gas & Fire Control Coal Mines, Xuzhou 221116, Jiangsu, Peoples R China
China Univ Min & Technol, State Key Lab Coal Resources & Safe Min, Xuzhou 221116, Jiangsu, Peoples R China
China Univ Min & Technol, Sch Safety Engn, Xuzhou 221116, Jiangsu, Peoples R ChinaChina Univ Min & Technol, Key Lab Gas & Fire Control Coal Mines, Xuzhou 221116, Jiangsu, Peoples R China
机构:
Natl Res Council Italy, Inst Nanotechnol, CNR NANOTEC, Rome Unit, Pl A Moro 5, I-00185 Rome, Italy
Sapienza Univ, Phys Dept, Pl A Moro 5, I-00185 Rome, Italy
Natl Res Council Italy, Inst Complex Syst, Sapienza Roma Unit, CNR ISC, Pl A Moro 5, I-00185 Rome, ItalyNatl Res Council Italy, Inst Nanotechnol, CNR NANOTEC, Rome Unit, Pl A Moro 5, I-00185 Rome, Italy
Leuzzi, L.
Rizzo, T.
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机构:
Sapienza Univ, Phys Dept, Pl A Moro 5, I-00185 Rome, Italy
Natl Res Council Italy, Inst Complex Syst, Sapienza Roma Unit, CNR ISC, Pl A Moro 5, I-00185 Rome, ItalyNatl Res Council Italy, Inst Nanotechnol, CNR NANOTEC, Rome Unit, Pl A Moro 5, I-00185 Rome, Italy
机构:
Niigata Univ, Grad Sch Sci & Technol, Niigata 9502181, JapanNiigata Univ, Grad Sch Sci & Technol, Niigata 9502181, Japan
Kurihara, Ryosuke
Mitsumoto, Keisuke
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机构:
Niigata Univ, Grad Sch Sci & Technol, Niigata 9502181, JapanNiigata Univ, Grad Sch Sci & Technol, Niigata 9502181, Japan
Mitsumoto, Keisuke
Akatsu, Mitsuhiro
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机构:
Niigata Univ, Fac Sci, Niigata 9502181, JapanNiigata Univ, Grad Sch Sci & Technol, Niigata 9502181, Japan
Akatsu, Mitsuhiro
Nemoto, Yuichi
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机构:
Niigata Univ, Grad Sch Sci & Technol, Niigata 9502181, Japan
JST, Transformat Res Project Iron Pnictides TRIP, Chiyoda Ku, Tokyo 1020075, JapanNiigata Univ, Grad Sch Sci & Technol, Niigata 9502181, Japan
Nemoto, Yuichi
Goto, Terutaka
论文数: 0引用数: 0
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机构:
Niigata Univ, Grad Sch Sci & Technol, Niigata 9502181, Japan
JST, Transformat Res Project Iron Pnictides TRIP, Chiyoda Ku, Tokyo 1020075, JapanNiigata Univ, Grad Sch Sci & Technol, Niigata 9502181, Japan
Goto, Terutaka
Kobayashi, Yoshiaki
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机构:
Nagoya Univ, Dept Phys, Nagoya, Aichi 4648602, Japan
JST, Transformat Res Project Iron Pnictides TRIP, Chiyoda Ku, Tokyo 1020075, JapanNiigata Univ, Grad Sch Sci & Technol, Niigata 9502181, Japan
Kobayashi, Yoshiaki
Sato, Masatoshi
论文数: 0引用数: 0
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机构:
Nagoya Univ, Dept Phys, Nagoya, Aichi 4648602, Japan
Comprehens Res Org Sci & Soc, Res Ctr Neutron Sci & Technol, Tsuchiura, Ibaraki 3000811, Japan
JST, Transformat Res Project Iron Pnictides TRIP, Chiyoda Ku, Tokyo 1020075, Japan
Nagoya Univ, Nagoya, Aichi, JapanNiigata Univ, Grad Sch Sci & Technol, Niigata 9502181, Japan