Investigation of Metabolomic Blood Biomarkers for Detection of Adenocarcinoma Lung Cancer

被引:55
作者
Fahrmann, Johannes F. [1 ]
Kim, Kyoungmi [2 ]
DeFelice, Brian C. [1 ]
Taylor, Sandra L. [2 ]
Gandara, David R. [3 ]
Yoneda, Ken Y. [4 ]
Cooke, David T. [5 ]
Fiehn, Oliver [1 ,6 ]
Kelly, Karen [3 ]
Miyamoto, Suzanne [3 ]
机构
[1] Univ Calif Davis, Genome Ctr, Davis, CA 95616 USA
[2] Univ Calif Davis, Sch Med, Dept Publ Hlth Sci, Div Biostat, Davis, CA 95616 USA
[3] Univ Calif Davis, Med Ctr, Sch Med, Div Hematol & Oncol,Dept Internal Med, Sacramento, CA 95817 USA
[4] Univ Calif Davis, Med Ctr, Dept Internal Med, Div Pulm Med, Sacramento, CA 95817 USA
[5] Univ Calif Davis, Dept Surg, Sch Med, Div Thorac Surg,Med Ctr, Sacramento, CA 95817 USA
[6] King Abdulaziz Univ, Dept Biochem, Fac Sci, Jeddah, Saudi Arabia
关键词
CLASSIFIER; DIAGNOSIS; TRIALS; PLASMA; SERUM;
D O I
10.1158/1055-9965.EPI-15-0427
中图分类号
R73 [肿瘤学];
学科分类号
100214 ;
摘要
Background: Untargeted metabolomics was used in case-control studies of adenocarcinoma (ADC) lung cancer to develop and test metabolite classifiers in serum and plasma as potential biomarkers for diagnosing lung cancer. Methods: Serum and plasma were collected and used in two independent case-control studies (ADC1 and ADC2). Controls were frequency matched for gender, age, and smoking history. There were 52 adenocarcinoma cases and 31 controls in ADC1 and 43 adenocarcinoma cases and 43 controls in ADC2. Metabolomics was conducted using gas chromatography time-of-flight mass spectrometry. Differential analysis was performed on ADC1 and the top candidates (FDR < 0.05) for serum and plasma used to develop individual and multiplex classifiers that were then tested on an independent set of serum and plasma samples (ADC2). Results: Aspartate provided the best accuracy (81.4%) for an individual metabolite classifier in serum, whereas pyrophos-phate had the best accuracy (77.9%) in plasma when independently tested. Multiplex classifiers of either 2 or 4 serum metabolites had an accuracy of 72.7% when independently tested. For plasma, a multimetabolite classifier consisting of 8 metabolites gave an accuracy of 77.3% when independently tested. Comparison of overall diagnostic performance between the two blood matrices yielded similar performances. However, serum is most ideal given higher sensitivity for low-abundant metabolites. Conclusion: This study shows the potential of metabolite-based diagnostic tests for detection of lung adenocarcinoma. Further validation in a larger pool of samples is warranted. Impact: These biomarkers could improve early detection and diagnosis of lung cancer. 2015 AACR.
引用
收藏
页码:1716 / 1723
页数:8
相关论文
共 22 条
  • [1] [Anonymous], 2014, Consenso Clinico: Procedimento no recem-nascido com risco infeccioso
  • [2] Twenty-two years of phase III trials for patients with advanced non-small-cell lung cancer: Sobering results
    Breathnach, OS
    Freidlin, B
    Conley, B
    Green, MR
    Johnson, DH
    Gandara, DR
    O'Connell, M
    Shepherd, FA
    Johnson, BE
    [J]. JOURNAL OF CLINICAL ONCOLOGY, 2001, 19 (06) : 1734 - 1742
  • [3] Metabolomics in cancer: A bench-to-bedside intersection
    Claudino, Wederson M.
    Goncalves, Priscila H.
    di Leo, Angelo
    Philip, Philip A.
    Sarkar, Fazlul H.
    [J]. CRITICAL REVIEWS IN ONCOLOGY HEMATOLOGY, 2012, 84 (01) : 1 - 7
  • [4] Fiehn O, 2005, LECT NOTES COMPUT SC, V3615, P224
  • [5] Quality control for plant metabolomics: reporting MSI-compliant studies
    Fiehn, Oliver
    Wohlgemuth, Gert
    Scholz, Martin
    Kind, Tobias
    Lee, Do Yup
    Lu, Yun
    Moon, Stephanie
    Nikolau, Basil
    [J]. PLANT JOURNAL, 2008, 53 (04) : 691 - 704
  • [6] The State of Molecular Biomarkers for the Early Detection of Lung Cancer
    Hassanein, Mohamed
    Callison, J. Clay
    Callaway-Lane, Carol
    Aldrich, Melinda C.
    Grogan, Eric L.
    Massion, Pierre P.
    [J]. CANCER PREVENTION RESEARCH, 2012, 5 (08) : 992 - 1006
  • [7] Cancer metabolomics in basic science perspective
    Kwon, Hyuknam
    Oh, Sehyun
    Jin, Xing
    An, Yong Jin
    Park, Sunghyouk
    [J]. ARCHIVES OF PHARMACAL RESEARCH, 2015, 38 (03) : 372 - 380
  • [8] A Blood-Based Proteomic Classifier for the Molecular Characterization of Pulmonary Nodules
    Li, Xiao-jun
    Hayward, Clive
    Fong, Pui-Yee
    Dominguez, Michel
    Hunsucker, Stephen W.
    Lee, Lik Wee
    McLean, Matthew
    Law, Scott
    Butler, Heather
    Schirm, Michael
    Gingras, Olivier
    Lamontagne, Julie
    Allard, Rene
    Chelsky, Daniel
    Price, Nathan D.
    Lam, Stephen
    Massion, Pierre P.
    Pass, Harvey
    Rom, William N.
    Vachani, Anil
    Fang, Kenneth C.
    Hood, Leroy
    Kearney, Paul
    [J]. SCIENCE TRANSLATIONAL MEDICINE, 2013, 5 (207)
  • [9] Criteria for the use of omics-based predictors in clinical trials: explanation and elaboration
    McShane, Lisa M.
    Cavenagh, Margaret M.
    Lively, Tracy G.
    Eberhard, David A.
    Bigbee, William L.
    Williams, P. Mickey
    Mesirov, Jill P.
    Polley, Mei-Yin C.
    Kim, Kelly Y.
    Tricoli, James V.
    Taylor, Jeremy M. G.
    Shuman, Deborah J.
    Simon, Richard M.
    Doroshow, James H.
    Conley, Barbara A.
    [J]. BMC MEDICINE, 2013, 11
  • [10] Altered Glutamine Metabolism and Therapeutic Opportunities for Lung Cancer
    Mohamed, Amr
    Deng, Xingming
    Khuri, Fadlo R.
    Owonikoko, Taofeek K.
    [J]. CLINICAL LUNG CANCER, 2014, 15 (01) : 7 - 15