Proteomic Analysis of Human Sputum for the Diagnosis of Lung Disorders: Where Are We Today?

被引:12
作者
D'Amato, Maura [1 ]
Iadarola, Paolo [2 ]
Viglio, Simona [1 ]
机构
[1] Univ Pavia, Dept Mol Med, I-27100 Pavia, Italy
[2] Univ Pavia, Dept Biol & Biotechnol L Spallanzani, I-27100 Pavia, Italy
关键词
sputum; proteomics; biomarker; COVID-19; COPD; cystic fibrosis; asthma; lung cancer; OBSTRUCTIVE PULMONARY-DISEASE; BIOMARKER DISCOVERY; CYSTIC-FIBROSIS; GASTROESOPHAGEAL-REFLUX; PROTEIN BIOMARKERS; ASTHMA; CANCER; SMOKERS; COPD; SIGNATURE;
D O I
10.3390/ijms23105692
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The identification of markers of inflammatory activity at the early stages of pulmonary diseases which share common characteristics that prevent their clear differentiation is of great significance to avoid misdiagnosis, and to understand the intrinsic molecular mechanism of the disorder. The combination of electrophoretic/chromatographic methods with mass spectrometry is currently a promising approach for the identification of candidate biomarkers of a disease. Since the fluid phase of sputum is a rich source of proteins which could provide an early diagnosis of specific lung disorders, it is frequently used in these studies. This report focuses on the state-of-the-art of the application, over the last ten years (2011-2021), of sputum proteomics in the investigation of severe lung disorders such as COPD; asthma; cystic fibrosis; lung cancer and those caused by COVID-19 infection. Analysis of the complete set of proteins found in sputum of patients affected by these disorders has allowed the identification of proteins whose levels change in response to the organism's condition. Understanding proteome dynamism may help in associating these proteins with alterations in the physiology or progression of diseases investigated.
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页数:24
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共 102 条
[1]   A novel approach based on low-field NMR for the detection of the pathological components of sputum in cystic fibrosis patients [J].
Abrami, Michela ;
Ascenzioni, Fiorentina ;
Di Domenico, Enea Gino ;
Maschio, Massimo ;
Ventura, Alessandro ;
Confalonieri, Marco ;
Di Gioia, Sante ;
Conese, Massimo ;
Dapas, Barbara ;
Grassi, Gabriele ;
Grassi, Mario .
MAGNETIC RESONANCE IN MEDICINE, 2018, 79 (04) :2323-2331
[2]   Evaluation of matrix metalloproteinase-2 in lung cancer [J].
Ali-Labib, Randa ;
Louka, Manal Louis ;
Galal, Iman Hassan El-Sayed ;
Tarek, Marwa .
PROTEOMICS CLINICAL APPLICATIONS, 2014, 8 (3-4) :251-257
[3]   Point-of-care biomarkers in asthma management: Time to move forward [J].
Alving, Kjell ;
Diamant, Zuzana ;
Lucas, Sarah ;
Magnussen, Helgo ;
Pavord, Ian D. ;
Piacentini, Giorgio ;
Price, David ;
Roche, Nicolas ;
Sastre, Joaquin ;
Thomas, Mike ;
Usmani, Omar ;
Bjermer, Leif .
ALLERGY, 2020, 75 (04) :995-997
[4]   Mass Spectrometry-Based Proteomics Research to Fight COVID-19: An Expert Review on Hopes and Challenges [J].
Amiri-Dashatan, Nasrin ;
Koushki, Mehdi ;
Rezaei-Tavirani, Mostafa .
OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY, 2022, 26 (01) :19-34
[5]   Biomarkers and surrogate endpoints: Preferred definitions and conceptual framework [J].
Atkinson, AJ ;
Colburn, WA ;
DeGruttola, VG ;
DeMets, DL ;
Downing, GJ ;
Hoth, DF ;
Oates, JA ;
Peck, CC ;
Schooley, RT ;
Spilker, BA ;
Woodcock, J ;
Zeger, SL .
CLINICAL PHARMACOLOGY & THERAPEUTICS, 2001, 69 (03) :89-95
[6]   Protein networks in induced sputum from smokers and COPD patients [J].
Baraniuk, James N. ;
Casado, Begona ;
Pannell, Lewis K. ;
McGarvey, Peter B. ;
Boschetto, Piera ;
Luisetti, Maurizio ;
Iadarola, Paolo .
INTERNATIONAL JOURNAL OF CHRONIC OBSTRUCTIVE PULMONARY DISEASE, 2015, 10 :1957-1975
[7]   Matrix metalloproteinases as stromal effectors of human carcinoma progression: Therapeutic implications [J].
Basset, P ;
Okada, A ;
Chenard, MP ;
Kannan, R ;
Stoll, I ;
Anglard, P ;
Bellocq, JP ;
Rio, MC .
MATRIX BIOLOGY, 1997, 15 (8-9) :535-541
[8]   Laboratory biomarkers for lung disease severity and progression in cystic fibrosis [J].
Bene, Zsolt ;
Fejes, Zsolt ;
Macek, Milan, Jr. ;
Amaral, Margarida D. ;
Balogh, Istvan ;
Nagy, Bela, Jr. .
CLINICA CHIMICA ACTA, 2020, 508 :277-286
[9]   Targeted proteomics as a tool to detect SARS-CoV-2 proteins in clinical specimens [J].
Bezstarosti, Karel ;
Lamers, Mart M. ;
Doff, Wouter A. S. ;
Wever, Peter C. ;
Thai, Khoa T. D. ;
van Kampen, Jeroen J. A. ;
Haagmans, Bart L. ;
Demmers, Jeroen A. A. .
PLOS ONE, 2021, 16 (11)
[10]   Proteome analysis of non-small cell lung cancer cell line secretomes and patient sputum reveals biofluid biomarker candidates for cisplatin response prediction [J].
Bottger, Franziska ;
Schaaij-Visser, Tieneke B. ;
de Reus, Inge ;
Piersma, Sander R. ;
Pham, Thang, V ;
Nagel, Remco ;
Brakenhoff, Ruud H. ;
Thunnissen, Erik ;
Smit, Egbert F. ;
Jimenez, Connie R. .
JOURNAL OF PROTEOMICS, 2019, 196 :106-119