Comparative Analysis of Genome-Wide Chromosomal Histone Modification Patterns in Maize Cultivars and Their Wild Relatives

被引：27

作者：

He, Shibin ^{[1
,2
]}

Yan, Shihan ^{[1
]}

Wang, Pu ^{[1
]}

Zhu, Wei ^{[3
]}

Wang, Xiangwu ^{[4
]}

Shen, Yao ^{[2
]}

Shao, Kejia ^{[2
]}

Xin, Haiping ^{[3
]}

Li, Shaohua ^{[3
]}

Li, Lijia ^{[1
]}

机构：

[1] Wuhan Univ, Coll Life Sci, State Key Lab Hybrid Rice, Wuhan 430072, Peoples R China

[2] Henan Univ, Coll Life Sci, State Key Lab Cotton Biol, Kaifeng, Peoples R China

[3] Chinese Acad Sci, Key Lab Plant Germplasm Enhancement & Specialty A, Wuhan Bot Garden, Wuhan, Peoples R China

[4] Henan Univ, Sch Phys & Elect, Kaifeng, Peoples R China

来源：

PLOS ONE | 2014年 / 9卷 / 05期

关键词：

ARABIDOPSIS-THALIANA; B-CHROMOSOMES; CHROMATIN; HETEROCHROMATIN; METHYLATION; EVOLUTION; PLANT; ACETYLATION; INHERITANCE; HYBRIDS;

D O I：

10.1371/journal.pone.0097364

中图分类号：

O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];

学科分类号：

07 ; 0710 ; 09 ;

摘要：

Recent advances demonstrate that epigenome changes can also cause phenotypic diversity and can be heritable across generations, indicating that they may play an important role in evolutionary processes. In this study, we analyzed the chromosomal distribution of several histone modifications in five elite maize cultivars (B73, Mo17, Chang7-2, Zheng58, ZD958) and their two wild relatives (Zea mays L. ssp. parviglumis and Zea nicaraguensis) using a three-dimensional (3D) epigenome karyotyping approach by combining immunostaining and 3D reconstruction with deconvolution techniques. The distribution of these histone modifications along chromosomes demonstrated that the histone modification patterns are conserved at the chromosomal level and have not changed significantly following domestication. The comparison of histone modification patterns between metaphase chromosomes and interphase nuclei showed that some of the histone modifications were retained as the cell progressed from interphase into metaphase, although remodelling existed. This study will increase comprehension of the function of epigenetic modifications in the structure and evolution of the maize genome.

引用

页数：12

共 44 条

[1]

Anderson LK, 2006, GENOME RES, V16, P115, DOI [10.1101/gr4249906, 10.1101/gr.4249906]

[2] Nongenetic Inheritance and Its Evolutionary Implications [J].

Bonduriansky, Russell ;

Day, Troy .

ANNUAL REVIEW OF ECOLOGY EVOLUTION AND SYSTEMATICS, 2009, 40 :103-125

[3] Transcriptionally active heterochromatin in rye B chromosomes [J].

Carchilan, Mariana ;

Delgado, Margarida ;

Ribeiro, Teresa ;

Costa-Nunes, Pedro ;

Caperta, Ana ;

Morais-Cecilio, Leonor ;

Jones, R. Neil ;

Viegas, Wanda ;

Houben, Andreas .

PLANT CELL, 2007, 19 (06) :1738-1749

[4] GENETIC AND MORPHOLOGICAL ANALYSIS OF A MAIZE TEOSINTE F2 POPULATION - IMPLICATIONS FOR THE ORIGIN OF MAIZE [J].

DOEBLEY, J ;

STEC, A ;

WENDEL, J ;

EDWARDS, M .

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1990, 87 (24) :9888-9892

[5] Chromosome C-banding of the teosinte Zea nicaraguensis and comparison to other Zea species [J].

Ellneskog-Staam, Pernilla ;

Loaisiga, Carlos Henry ;

Merker, Arnulf .

HEREDITAS, 2007, 144 (03) :96-101

[6] Epigenetic Reprogramming in Plant and Animal Development [J].

Feng, Suhua ;

Jacobsen, Steven E. ;

Reik, Wolf .

SCIENCE, 2010, 330 (6004) :622-627

[7] The chromosomal distribution of histone methylation marks in gymnosperms differs from that of angiosperms [J].

Fuchs, Joerg ;

Jovtchev, Gabriele ;

Schubert, Ingo .

CHROMOSOME RESEARCH, 2008, 16 (06) :891-898

[8] Chromosomal histone modification patterns - from conservation to diversity [J].

Fuchs, Joerg ;

Demidov, Dmitri ;

Houben, Andreas ;

Schubert, Ingo .

TRENDS IN PLANT SCIENCE, 2006, 11 (04) :199-208

[9]

Fuchs J, 2012, PLANT GENET GENOMICS, V4, P231, DOI 10.1007/978-0-387-70869-0_9

[10] Epigenetic Feedback Regulation Accelerates Adaptation and Evolution [J].

Furusawa, Chikara ;

Kaneko, Kunihiko .

PLOS ONE, 2013, 8 (05)

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