A rule-based approach for automatically extracting data from systematic reviews and their updates to model the risk of conclusion change

被引:3
作者
Bashir, Rabia [1 ]
Dunn, Adam G. [1 ,2 ]
Surian, Didi [1 ]
机构
[1] Macquarie Univ, Ctr Hlth Informat, Australian Inst Hlth Innovat, Fac Med Hlth & Human Sci, Sydney, NSW, Australia
[2] Univ Sydney, Sch Med Sci, Fac Med & Hlth, Discipline Biomed Informat & Digital Hlth, Sydney, NSW, Australia
关键词
conclusion change; machine learning; rule‐ based method; systematic review update; MASS-PRODUCTION; WORKLOAD;
D O I
10.1002/jrsm.1473
中图分类号
Q [生物科学];
学科分类号
07 ; 0710 ; 09 ;
摘要
Few data-driven approaches are available to estimate the risk of conclusion change in systematic review updates. We developed a rule-based approach to automatically extract information from reviews and updates to be used as features for modelling conclusion change risk. Rules were developed to extract relevant information from published Cochrane reviews and used to construct four features: the number of included trials and participants in the reviews, a measure based on the number of participants, and the time elapsed between the search dates. We compared the performance of random forest, decision tree, and logistic regression to predict the conclusion change risk. The performance was measured by accuracy, precision, recall, F-1-score, and area under ROC (AU-ROC). One rule was developed to extract the conclusion change information (96% accuracy, 100 reviews), one for the search date (100% accuracy, 100 reviews), one for the number of included clinical trials (100% accuracy, 100 reviews), and 22 for the number of participants (97.3% accuracy, 200 reviews). For unseen reviews, the random forest classifier showed the highest accuracy (80.8%) and AU-ROC (0.80). All classifiers showed relatively similar performance with overlapping 95% confidence interval (CI). The coverage score was shown to be the most useful feature for predicting the conclusion change risk. Features mined from Cochrane reviews and updates can estimate conclusion change risk. If data from more published reviews and updates were made accessible, data-driven methods to predict the conclusion change risk may be a feasible way to support decisions about updating reviews.
引用
收藏
页码:216 / 225
页数:10
相关论文
共 29 条
  • [11] UIMA Ruta: Rapid development of rule-based information extraction applications
    Kluegl, Peter
    Toepfer, Martin
    Beck, Philip-Daniel
    Fette, Georg
    Puppe, Frank
    [J]. NATURAL LANGUAGE ENGINEERING, 2016, 22 (01) : 1 - 40
  • [12] Automatic screening using word embeddings achieved high sensitivity and workload reduction for updating living network meta-analyses
    Lerner, Ivan
    Crequit, Perrine
    Ravaud, Philippe
    Atal, Ignacio
    [J]. JOURNAL OF CLINICAL EPIDEMIOLOGY, 2019, 108 : 86 - 94
  • [13] A comparative analysis of semi-supervised learning: The case of article selection for medical systematic reviews
    Liu, Jun
    Timsina, Prem
    El-Gayar, Omar
    [J]. INFORMATION SYSTEMS FRONTIERS, 2018, 20 (02) : 195 - 207
  • [14] Automating Biomedical Evidence Synthesis: RobotReviewer
    Marshall, Iain J.
    Kuiper, Joel
    Banner, Edward
    Wallace, Byron C.
    [J]. PROCEEDINGS OF THE 55TH ANNUAL MEETING OF THE ASSOCIATION FOR COMPUTATIONAL LINGUISTICS (ACL 2017): SYSTEM DEMONSTRATIONS, 2017, : 7 - 12
  • [15] Trial2rev: Combining machine learning and crowd-sourcing to create a shared space for updating systematic reviews
    Martin, Paige
    Surian, Didi
    Bashir, Rabia
    Bourgeois, Florence T.
    Dunn, Adam G.
    [J]. JAMIA OPEN, 2019, 2 (01) : 15 - 22
  • [16] Methodological systematic review identifies major limitations in prioritization processes for updating
    Martinez Garcia, Laura
    Pardo-Hemandez, Hector
    Superchi, Cecilia
    Nino de Guzman, Ena
    Ballesteros, Monica
    Ibargoyen Roteta, Nora
    McFarlane, Emma
    Posso, Margarita
    Roque i Figuls, Marta
    Rotaeche del Campo, Rafael
    Juliana Sanabria, Andrea
    Selva, Anna
    Sola, Ivan
    Vernooij, Robin W. M.
    Alonso-Coello, Pablo
    [J]. JOURNAL OF CLINICAL EPIDEMIOLOGY, 2017, 86 : 11 - 24
  • [17] A new algorithm for reducing the workload of experts in performing systematic reviews
    Matwin, Stan
    Kouznetsov, Alexandre
    Inkpen, Diana
    Frunza, Oana
    O'Blenis, Peter
    [J]. JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION, 2010, 17 (04) : 446 - 453
  • [18] A systematic review identified few methods and strategies describing when and how to update systematic reviews
    Moher, David
    Tsertsvadze, Alexander
    Tricco, Andrea C.
    Eccles, Martin
    Grimshaw, Jeremy
    Sampson, Margaret
    Barrowman, Nick
    [J]. JOURNAL OF CLINICAL EPIDEMIOLOGY, 2007, 60 (11) : 1095 - 1104
  • [19] Interventions to improve the use of systematic reviews in decision-making by health system managers, policy makers and clinicians
    Murthy, Lakshmi
    Shepperd, Sasha
    Clarke, Mike J.
    Garner, Sarah E.
    Lavis, John N.
    Perrier, Laure
    Roberts, Nia W.
    Straus, Sharon E.
    [J]. COCHRANE DATABASE OF SYSTEMATIC REVIEWS, 2012, (09):
  • [20] Using text mining for study identification in systematic reviews: A systematic review of current approaches
    O'Mara-Eves A.
    Thomas J.
    McNaught J.
    Miwa M.
    Ananiadou S.
    [J]. Systematic Reviews, 4 (1)