A rule-based approach for automatically extracting data from systematic reviews and their updates to model the risk of conclusion change

被引:3
作者
Bashir, Rabia [1 ]
Dunn, Adam G. [1 ,2 ]
Surian, Didi [1 ]
机构
[1] Macquarie Univ, Ctr Hlth Informat, Australian Inst Hlth Innovat, Fac Med Hlth & Human Sci, Sydney, NSW, Australia
[2] Univ Sydney, Sch Med Sci, Fac Med & Hlth, Discipline Biomed Informat & Digital Hlth, Sydney, NSW, Australia
关键词
conclusion change; machine learning; rule‐ based method; systematic review update; MASS-PRODUCTION; WORKLOAD;
D O I
10.1002/jrsm.1473
中图分类号
Q [生物科学];
学科分类号
07 ; 0710 ; 09 ;
摘要
Few data-driven approaches are available to estimate the risk of conclusion change in systematic review updates. We developed a rule-based approach to automatically extract information from reviews and updates to be used as features for modelling conclusion change risk. Rules were developed to extract relevant information from published Cochrane reviews and used to construct four features: the number of included trials and participants in the reviews, a measure based on the number of participants, and the time elapsed between the search dates. We compared the performance of random forest, decision tree, and logistic regression to predict the conclusion change risk. The performance was measured by accuracy, precision, recall, F-1-score, and area under ROC (AU-ROC). One rule was developed to extract the conclusion change information (96% accuracy, 100 reviews), one for the search date (100% accuracy, 100 reviews), one for the number of included clinical trials (100% accuracy, 100 reviews), and 22 for the number of participants (97.3% accuracy, 200 reviews). For unseen reviews, the random forest classifier showed the highest accuracy (80.8%) and AU-ROC (0.80). All classifiers showed relatively similar performance with overlapping 95% confidence interval (CI). The coverage score was shown to be the most useful feature for predicting the conclusion change risk. Features mined from Cochrane reviews and updates can estimate conclusion change risk. If data from more published reviews and updates were made accessible, data-driven methods to predict the conclusion change risk may be a feasible way to support decisions about updating reviews.
引用
收藏
页码:216 / 225
页数:10
相关论文
共 29 条
  • [1] Machine learning algorithms for systematic review: reducing workload in a preclinical review of animal studies and reducing human screening error
    Bannach-Brown, Alexandra
    Przybyla, Piotr
    Thomas, James
    Rice, Andrew S. C.
    Ananiadou, Sophia
    Liao, Jing
    Macleod, Malcolm Robert
    [J]. SYSTEMATIC REVIEWS, 2019, 8 (1)
  • [2] The risk of conclusion change in systematic review updates can be estimated by learning from a database of published examples
    Bashir, Rabia
    Surian, Didi
    Dunn, Adam G.
    [J]. JOURNAL OF CLINICAL EPIDEMIOLOGY, 2019, 110 : 42 - 49
  • [3] Basu T., 2016, ARXIV160606424
  • [4] Borlawsky Tara, 2006, AMIA Annu Symp Proc, P56
  • [5] Reducing workload in systematic review preparation using automated citation classification
    Cohen, AM
    Hersh, WR
    Peterson, K
    Yen, PY
    [J]. JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION, 2006, 13 (02) : 206 - 219
  • [6] Postmarket Safety Events Among Novel Therapeutics Approved by the US Food and Drug Administration Between 2001 and 2010
    Downing, Nicholas S.
    Shah, Nilay D.
    Aminawung, Jenerius A.
    Pease, Alison M.
    Zeitoun, Jean-David
    Krumholz, Harlan M.
    Ross, Joseph S.
    [J]. JAMA-JOURNAL OF THE AMERICAN MEDICAL ASSOCIATION, 2017, 317 (18): : 1854 - 1863
  • [7] When and how to update systematic reviews: consensus and checklist
    Garner, Paul
    Hopewell, Sally
    Chandler, Jackie
    MacLehose, Harriet
    Schunemann, Holger J.
    Akl, Elie A.
    Beyene, Joseph
    Chang, Stephanie
    Churchill, Rachel
    Dearness, Karin
    Guyatt, Gordon
    Lefebvre, Carol
    Liles, Beth
    Marshall, Rachel
    Martinez Garcia, Laura
    Mavergames, Chris
    Nasser, Mona
    Qaseem, Amir
    Sampson, Margaret
    Soares-Weiser, Karla
    Takwoingi, Yemisi
    Thabane, Lehana
    Trivella, Marialena
    Tugwell, Peter
    Welsh, Emma
    Wilson, Ed C.
    [J]. BMJ-BRITISH MEDICAL JOURNAL, 2016, 354
  • [8] SWIFT-Review: A text-mining workbench for systematic review
    Howard B.E.
    Phillips J.
    Miller K.
    Tandon A.
    Mav D.
    Shah M.R.
    Holmgren S.
    Pelch K.E.
    Walker V.
    Rooney A.A.
    Macleod M.
    Shah R.R.
    Thayer K.
    [J]. Systematic Reviews, 5 (1)
  • [9] The Mass Production of Redundant, Misleading, and Conflicted Systematic Reviews and Meta-analyses
    Ioannidis, John P. A.
    [J]. MILBANK QUARTERLY, 2016, 94 (03) : 485 - 514
  • [10] Learning to identify relevant studies for systematic reviews using random forest and external information
    Khabsa, Madian
    Elmagarmid, Ahmed
    Ilyas, Ihab
    Hammady, Hossam
    Ouzzani, Mourad
    [J]. MACHINE LEARNING, 2016, 102 (03) : 465 - 482