Conformations in Solution and in Solid-State Polymorphs: Correlating Experimental and Calculated Nuclear Magnetic Resonance Chemical Shifts for Tolfenamic Acid

被引:7
作者
Blade, Helen [4 ]
Blundell, Charles D. [2 ]
Brown, Steven P. [3 ]
Carson, Jake [1 ]
Dannatt, Hugh R. W. [2 ]
Hughes, Leslie P. [4 ]
Menakath, Anjali K. [3 ]
机构
[1] Univ Warwick, Dept Stat, Coventry CV4 7AL, W Midlands, England
[2] C4X Discovery, Manchester M1 3LD, Lancs, England
[3] Univ Warwick, Dept Phys, Coventry CV4 7AL, W Midlands, England
[4] AstraZeneca, Oral Prod Dev Pharmaceut Technol & Dev Operat, Macclesfield SK10 2NA, Cheshire, England
关键词
CRYSTAL-STRUCTURE PREDICTION; POWDER DIFFRACTION DATA; X-RAY-DIFFRACTION; NMR CRYSTALLOGRAPHY; 1ST-PRINCIPLES CALCULATIONS; PACKING INTERACTIONS; PARAMETERS; PROTON; C-13; H-1;
D O I
10.1021/acs.jpca.0c07000
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
A new approach for quantitively assessing putative crystal structures with applications in crystal structure prediction (CSP) is introduced that is based upon experimental solution- and magic-angle spinning (MAS) solid-state NMR data and density functional theory (DFT) calculation. For the specific case of tolfenamic acid (TFA), we consider experimental solution-state NMR for a range of solvents, experimental MAS NMR of polymorphs I and II, and DFT calculations for four polymorphs. The change in NMR chemical shift observed in passing from the solution state to the solid state (Delta delta(Experimental)) is calculated as the difference between H-1 and C-13 experimental solid-state chemical shifts for each polymorphic form (delta(Solid expt)) and the corresponding solution-state NMR chemical shifts (delta(Solution expt)). Separately, we use the gauge-included projector augmented wave (GIPAW) method to calculate the NMR chemical shifts for each form (delta(Solid calc)) and for TFA in solution (delta(Solution calc)) using the dynamic 3D solution conformational ensemble determined from NMR spectroscopy. The calculated change in passing from the solution state to the solid state (Delta delta(Calculated)) is then calculated as the difference of delta(Solid calc) and delta(Solution calc). Regression analysis for Delta delta(Calculated )against Delta delta(Experimental) followed by a t-test for statistical significance provides a robust quantitative assessment. We show that this assessment clearly identifies the correct polymorph, i.e., when comparing Delta delta(Experimental )based on the experimental MAS NMR chemical shifts of form I or II with Delta delta(Calculated )based on calculated chemical shifts for polymorphs I, II, III, and IV. Complementarity to the established approach of comparing delta(Solid expt) to delta(Solid calc) is explored. We further show that our approach is applicable if there are no solid-state crystal structure data. Specifically, delta(Solid calc) in Delta delta(Calculated) is replaced by the chemical shift for an isolated molecule with a specific conformation. Sampling conformations at specific 1S degrees angle values and comparing them against experimental C-13 chemical shift data for forms I and H identifies matching narrow ranges of conformations, successfully predicting the conformation of tolfenamic acid in each form. This methodology can therefore be used in crystal structure prediction to both reduce the initial conformational search space and also quantitatively assess subsequent putative structures to reliably and unambiguously identify the correct structure.
引用
收藏
页码:8959 / 8977
页数:19
相关论文
共 58 条
[1]   CHARACTERIZATION OF 2 POLYMORPHIC FORMS OF TOLFENAMIC ACID, N-(2-METHYL-3-CHLOROPHENYL)ANTHRANILIC ACID - THEIR CRYSTAL-STRUCTURES AND RELATIVE STABILITIES [J].
ANDERSEN, KV ;
LARSEN, S ;
ALHEDE, B ;
GELTING, N ;
BUCHARDT, O .
JOURNAL OF THE CHEMICAL SOCIETY-PERKIN TRANSACTIONS 2, 1989, (10) :1443-1447
[2]   Combining solid-state NMR spectroscopy with first-principles calculations - a guide to NMR crystallography [J].
Ashbrook, Sharon E. ;
McKay, David .
CHEMICAL COMMUNICATIONS, 2016, 52 (45) :7186-7204
[3]   De Novo Determination of the Crystal Structure of a Large Drug Molecule by Crystal Structure Prediction-Based Powder NMR Crystallography [J].
Baias, Maria ;
Dumez, Jean-Nicolas ;
Svensson, Per H. ;
Schantz, Staffan ;
Day, Graeme M. ;
Emsley, Lyndon .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2013, 135 (46) :17501-17507
[4]   Powder crystallography of pharmaceutical materials by combined crystal structure prediction and solid-state 1H NMR spectroscopy [J].
Baias, Maria ;
Widdifield, Cory M. ;
Dumez, Jean-Nicolas ;
Thompson, Hugh P. G. ;
Cooper, Timothy G. ;
Salager, Elodie ;
Bassil, Sirena ;
Stein, Robin S. ;
Lesage, Anne ;
Day, Graeme M. ;
Emsley, Lyndon .
PHYSICAL CHEMISTRY CHEMICAL PHYSICS, 2013, 15 (21) :8069-8080
[5]   Quantification of free ligand conformational preferences by NMR and their relationship to the bioactive conformation [J].
Blundell, Charles D. ;
Packer, Martin J. ;
Almond, Andrew .
BIOORGANIC & MEDICINAL CHEMISTRY, 2013, 21 (17) :4976-4987
[6]   First-Principles Calculation of NMR Parameters Using the Gauge Including Projector Augmented Wave Method: A Chemist's Point of View [J].
Bonhomme, Christian ;
Gervais, Christel ;
Babonneau, Florence ;
Coelho, Cristina ;
Pourpoint, Frederique ;
Azais, Thierry ;
Ashbrook, Sharon E. ;
Griffin, John M. ;
Yates, Jonathan R. ;
Mauri, Francesco ;
Pickard, Chris J. .
CHEMICAL REVIEWS, 2012, 112 (11) :5733-5779
[7]   Solving larger molecular crystal structures from powder diffraction data by exploiting anisotropic thermal expansion [J].
Brunelli, M ;
Wright, JP ;
Vaughan, GRM ;
Mora, AJ ;
Fitch, AN .
ANGEWANDTE CHEMIE-INTERNATIONAL EDITION, 2003, 42 (18) :2029-2032
[8]   NMR crystallography: structure and properties of materials from solid-state nuclear magnetic resonance observables [J].
Bryce, David L. .
IUCRJ, 2017, 4 :350-359
[9]   Successful Computationally Directed Templating of Metastable Pharmaceutical Polymorphs [J].
Case, David H. ;
Srirambhatla, Vijay K. ;
Guo, Rui ;
Watson, Rona E. ;
Price, Louise S. ;
Polyzois, Hector ;
Cockcroft, Jeremy K. ;
Florence, Alastair J. ;
Tocher, Derek A. ;
Price, Sarah L. .
CRYSTAL GROWTH & DESIGN, 2018, 18 (09) :5322-5331
[10]   The PAW/GIPAW approach for computing NMR parameters: A new dimension added to NMR study of solids [J].
Charpentier, Thibault .
SOLID STATE NUCLEAR MAGNETIC RESONANCE, 2011, 40 (01) :1-20