Genome-wide association study and meta-analysis of intraocular pressure

被引:82
|
作者
Ozel, A. Bilge [1 ]
Moroi, Sayoko E. [2 ]
Reed, David M. [2 ]
Nika, Melisa [2 ]
Schmidt, Caroline M. [2 ]
Akbari, Sara [2 ]
Scott, Kathleen [2 ]
Rozsa, Frank [2 ]
Pawar, Hemant [2 ]
Musch, David C. [2 ,3 ]
Lichter, Paul R. [2 ]
Gaasterland, Doug [4 ]
Branham, Kari [2 ]
Gilbert, Jesse [2 ]
Garnai, Sarah J. [2 ]
Chen, Wei [5 ,6 ,7 ]
Othman, Mohammad [2 ]
Heckenlively, John [2 ]
Swaroop, Anand [8 ]
Abecasis, Goncalo [9 ]
Friedman, David S. [10 ]
Zack, Don [10 ]
Ashley-Koch, Allison [11 ]
Ulmer, Megan [11 ]
Kang, Jae H. [12 ]
Liu, Yutao [11 ]
Yaspan, Brian L. [13 ]
Haines, Jonathan [13 ]
Allingham, R. Rand [11 ]
Hauser, Michael A. [11 ]
Pasquale, Louis [12 ,14 ]
Wiggs, Janey [14 ]
Richards, Julia E. [2 ,3 ]
Li, Jun Z. [1 ]
机构
[1] Univ Michigan, Dept Human Genet, Ann Arbor, MI 48109 USA
[2] Univ Michigan, Dept Ophthalmol & Visual Sci, Ann Arbor, MI 48109 USA
[3] Univ Michigan, Dept Epidemiol, Ann Arbor, MI 48109 USA
[4] Eye Doctors Washington DC, Washington, DC USA
[5] Univ Pittsburgh, Childrens Hosp Pittsburgh, Sch Med, Div Pulm Med Allergy & Immunol, Pittsburgh, PA USA
[6] Univ Pittsburgh, Dept Biostat, Pittsburgh, PA 15261 USA
[7] Univ Pittsburgh, Dept Human Genet, Pittsburgh, PA USA
[8] NEI, NIH, Bethesda, MD 20892 USA
[9] Univ Michigan, Dept Biostat, Ann Arbor, MI 48109 USA
[10] Johns Hopkins Univ, Sch Med, Dept Ophthalmol, Baltimore, MD 21205 USA
[11] Duke Univ, Sch Med, Ctr Human Genet, Durham, NC USA
[12] Brigham & Womens Hosp, Channing Div Network Med, Boston, MA 02115 USA
[13] Vanderbilt Univ, Sch Med, Ctr Human Genet Res, Nashville, TN 37212 USA
[14] Harvard Univ, Massachusetts Eye & Ear Infirm, Sch Med, Dept Ophthalmol, Boston, MA USA
关键词
OPEN-ANGLE GLAUCOMA; CENTRAL CORNEAL THICKNESS; TO-DISC RATIO; MACULAR DEGENERATION; MOLECULAR-BIOLOGY; GENETIC-VARIANTS; RISK-FACTORS; HERITABILITY; EYE; POPULATION;
D O I
10.1007/s00439-013-1349-5
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
Elevated intraocular pressure (IOP) is a major risk factor for glaucoma and is influenced by genetic and environmental factors. Recent genome-wide association studies (GWAS) reported associations with IOP at TMCO1 and GAS7, and with primary open-angle glaucoma (POAG) at CDKN2B-AS1, CAV1/CAV2, and SIX1/SIX6. To identify novel genetic variants and replicate the published findings, we performed GWAS and meta-analysis of IOP in > 6,000 subjects of European ancestry collected in three datasets: the NEI Glaucoma Human genetics collaBORation, GLAUcoma Genes and ENvironment study, and a subset of the Age-related Macular Degeneration-Michigan, Mayo, AREDS and Pennsylvania study. While no signal achieved genome-wide significance in individual datasets, a meta-analysis identified significant associations with IOP at TMCO1 (rs7518099-G, p = 8.0 x 10(-8)). Focused analyses of five loci previously reported for IOP and/or POAG, i.e., TMCO1, CDKN2B-AS1, GAS7, CAV1/CAV2, and SIX1/SIX6, revealed associations with IOP that were largely consistent across our three datasets, and replicated the previously reported associations in both effect size and direction. These results confirm the involvement of common variants in multiple genomic regions in regulating IOP and/or glaucoma risk.
引用
收藏
页码:41 / 57
页数:17
相关论文
共 50 条
  • [1] Genome-wide association study and meta-analysis of intraocular pressure
    A. Bilge Ozel
    Sayoko E. Moroi
    David M. Reed
    Melisa Nika
    Caroline M. Schmidt
    Sara Akbari
    Kathleen Scott
    Frank Rozsa
    Hemant Pawar
    David C. Musch
    Paul R. Lichter
    Doug Gaasterland
    Kari Branham
    Jesse Gilbert
    Sarah J. Garnai
    Wei Chen
    Mohammad Othman
    John Heckenlively
    Anand Swaroop
    Gonçalo Abecasis
    David S. Friedman
    Don Zack
    Allison Ashley-Koch
    Megan Ulmer
    Jae H. Kang
    Yutao Liu
    Brian L. Yaspan
    Jonathan Haines
    R. Rand Allingham
    Michael A. Hauser
    Louis Pasquale
    Janey Wiggs
    Julia E. Richards
    Jun Z. Li
    Human Genetics, 2014, 133 : 41 - 57
  • [2] Genome-wide association study of glioma and meta-analysis
    Rajaraman, Preetha
    Melin, Beatrice S.
    Wang, Zhaoming
    McKean-Cowdin, Roberta
    Michaud, Dominique S.
    Wang, Sophia S.
    Bondy, Melissa
    Houlston, Richard
    Jenkins, Robert B.
    Wrensch, Margaret
    Yeager, Meredith
    Ahlbom, Anders
    Albanes, Demetrius
    Andersson, Ulrika
    Freeman, Laura E. Beane
    Buring, Julie E.
    Butler, Mary Ann
    Braganza, Melissa
    Carreon, Tania
    Feychting, Maria
    Fleming, Sarah J.
    Gapstur, Susan M.
    Gaziano, J. Michael
    Giles, Graham G.
    Hallmans, Goran
    Henriksson, Roger
    Hoffman-Bolton, Judith
    Inskip, Peter D.
    Johansen, Christoffer
    Kitahara, Cari M.
    Lathrop, Mark
    Liu, Chenwei
    Le Marchand, Loic
    Linet, Martha S.
    Lonn, Stefan
    Peters, Ulrike
    Purdue, Mark P.
    Rothman, Nathaniel
    Ruder, Avima M.
    Sanson, Marc
    Sesso, Howard D.
    Severi, Gianluca
    Shu, Xiao-Ou
    Simon, Matthias
    Stampfer, Meir
    Stevens, Victoria L.
    Visvanathan, Kala
    White, Emily
    Wolk, Alicja
    Zeleniuch-Jacquotte, Anne
    HUMAN GENETICS, 2012, 131 (12) : 1877 - 1888
  • [3] Genome-wide association study of glioma and meta-analysis
    Preetha Rajaraman
    Beatrice S. Melin
    Zhaoming Wang
    Roberta McKean-Cowdin
    Dominique S. Michaud
    Sophia S. Wang
    Melissa Bondy
    Richard Houlston
    Robert B. Jenkins
    Margaret Wrensch
    Meredith Yeager
    Anders Ahlbom
    Demetrius Albanes
    Ulrika Andersson
    Laura E. Beane Freeman
    Julie E. Buring
    Mary Ann Butler
    Melissa Braganza
    Tania Carreon
    Maria Feychting
    Sarah J. Fleming
    Susan M. Gapstur
    J. Michael Gaziano
    Graham G. Giles
    Goran Hallmans
    Roger Henriksson
    Judith Hoffman-Bolton
    Peter D. Inskip
    Christoffer Johansen
    Cari M. Kitahara
    Mark Lathrop
    Chenwei Liu
    Loic Le Marchand
    Martha S. Linet
    Stefan Lonn
    Ulrike Peters
    Mark P. Purdue
    Nathaniel Rothman
    Avima M. Ruder
    Marc Sanson
    Howard D. Sesso
    Gianluca Severi
    Xiao-Ou Shu
    Matthias Simon
    Meir Stampfer
    Victoria L. Stevens
    Kala Visvanathan
    Emily White
    Alicja Wolk
    Anne Zeleniuch-Jacquotte
    Human Genetics, 2012, 131 : 1877 - 1888
  • [4] The meta-analysis of genome-wide association studies
    Thompson, John R.
    Attia, John
    Minelli, Cosetta
    BRIEFINGS IN BIOINFORMATICS, 2011, 12 (03) : 259 - 269
  • [5] A pilot genome-wide association study meta-analysis of gastroparesis
    Tavares, Leticia Camargo
    Zheng, Tenghao
    Kwicklis, Madeline
    Mitchell, Emily
    Pandit, Anita
    Pullapantula, Suraj
    Bernard, Cheryl
    Teder-Laving, Maris
    Marques, Francine Z.
    Esko, Tonu
    Kuo, Braden
    Shulman, Robert J.
    Chumpitazi, Bruno P.
    Koch, Kenneth L.
    Sarosiek, Irene
    Abell, Thomas L.
    Mccallum, Richard W.
    Parkman, Henry P.
    Pasricha, Pankaj J.
    Hamilton, Frank A.
    Tonascia, James
    Zawistowski, Matthew
    Farrugia, Gianrico
    Grover, Madhusudan
    D'Amato, Mauro
    UNITED EUROPEAN GASTROENTEROLOGY JOURNAL, 2023, 11 (08) : 784 - 796
  • [6] GENOME-WIDE ASSOCIATION META-ANALYSIS OF GASTROPARESIS
    Tavares, Leticia C.
    Zheng, Tenghao
    Mitchell, Emily P.
    Kwicklis, Madeline
    Pandit, Anita
    Bernard, Cheryl
    Teder-Laving, Maris
    Marques, Francine
    Esko, Tonu
    Zawistowski, Matthew
    Kuo, Braden
    Shulman, Robert J.
    Chumpitazi, Bruno P.
    Koch, Kenneth L.
    Sarosiek, Irene
    Abell, Thomas
    McCallum, Richard W.
    Parkman, Henry P.
    Pasricha, Pankaj J.
    Hamilton, Frank A.
    Tonascia, James
    Farrugia, Gianrico
    Grover, Madhusudan
    D'Amato, Mauro
    GASTROENTEROLOGY, 2022, 162 (07) : S156 - S157
  • [7] Meta-analysis in genome-wide association studies
    Zeggini, E.
    Ioannidis, J. P. A.
    PHARMACOGENOMICS, 2009, 10 (02) : 191 - 201
  • [8] Methods for multiancestry genome-wide association study meta-analysis
    Yap, Chuan Fu
    Morris, Andrew P.
    ANNALS OF HUMAN GENETICS, 2024,
  • [9] Genetic variations and risk of placental abruption: A genome-wide association study and meta-analysis of genome-wide association studies
    Workalemahu, Tsegaselassie
    Enquobahrie, Daniel A.
    Gelaye, Bizu
    Sanchez, Sixto E.
    Garcia, Pedro J.
    Tekola-Ayele, Fasil
    Hajat, Anjum
    Thornton, Timothy A.
    Ananth, Cande V.
    Williams, Michelle A.
    PLACENTA, 2018, 66 : 8 - 16
  • [10] On individual genome-wide association studies and their meta-analysis
    Pei, Yu-Fang
    Zhang, Lei
    Papasian, Christopher J.
    Wang, Yu-Ping
    Deng, Hong-Wen
    HUMAN GENETICS, 2014, 133 (03) : 265 - 279