The classification and nomenclature of endogenous viruses of the family Caulimoviridae

被引：39

作者：

Geering, Andrew D. W. ^{[1
,2
]}

Scharaschkin, Tanya ^{[2
,3
]}

Teycheney, Pierre-Yves ^{[4
]}

机构：

[1] Queensland Primary Ind & Fisheries, 80 Meiers Rd, Indooroopilly, Qld 4068, Australia

[2] Univ Canberra, Innovat Ctr, Cooperat Res Ctr Natl Plant Biosecur, Bruce, ACT 2617, Australia

[3] Queensland Univ Technol, Sch Nat Resource Sci, Brisbane, Qld 4001, Australia

[4] Ctr Cooperat Int Rech Agron Dev, BIOS UPR75, Stn Neufchateau, F-97130 St Marie, Guadeloupe, France

来源：

ARCHIVES OF VIROLOGY | 2010年 / 155卷 / 01期

关键词：

REVERSE TRANSCRIBING ELEMENTS; VEIN MOSAIC-VIRUS; PARARETROVIRAL SEQUENCES; CRYSTAL-STRUCTURE; CONSERVED FEATURE; GENOME; DNA; IDENTIFICATION; RETROVIRUSES; EVOLUTION;

D O I：

10.1007/s00705-009-0488-4

中图分类号：

Q93 [微生物学];

学科分类号：

071005 ; 100705 ;

摘要：

Endogenous members of the family Caulimoviridae have now been found in the genomes of many plant species. Although these sequences are usually fragmented and rearranged and show varying degrees of decay, the genomes of the ancestral viruses can often be reassembled in silico, allowing classification within the existing viral taxonomic framework. In this paper, we describe analyses of endogenous members of the family Caulimoviridae in the genomes of Oryza sativa, Nicotiana tabacum and Solanum spp. and on the basis of phylogeny, genome organization and genetic distance within the pol gene, propose two new virus genera called Orendovirus and Solendovirus. A system of nomenclature for endogenous virus sequences in plants is also proposed.

引用

页码：123 / 131

页数：9

共 45 条

[1] Multiple groups of endogenous betaretroviruses in mice, rats, and other mammals [J].