ELLSTAT:: shape modeling for solution small-angle scattering of proteins and protein complexes with automated statistical characterization

被引:19
作者
Heller, William T. [1 ]
机构
[1] Oak Ridge Natl Lab, Ctr Struct Mol Biol, Oak Ridge, TN 37831 USA
[2] Oak Ridge Natl Lab, Div Chem Sci, Oak Ridge, TN 37831 USA
关键词
D O I
10.1107/S0021889806029591
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
A method is presented for constructing one- and two-ellipsoid, core-shell-ellipsoid, cylinder and ellipsoid-plus-cylinder models from small-angle X-ray and neutron scattering data that calculates statistics on the resulting structural parameters. The method, implemented in the software ELLSTAT, is capable of simultaneously fitting against several data sets and calculates averages, standard deviations and coefficients of linear correlation between the structural parameters of the resulting models. In this way, an improved understanding of the extent of the variability in and the interdependency between the model parameters that fit the input scattering data is developed, thereby providing a measure of the uniqueness of the models.
引用
收藏
页码:671 / 675
页数:5
相关论文
共 21 条
[1]   The Protein Data Bank [J].
Berman, HM ;
Westbrook, J ;
Feng, Z ;
Gilliland, G ;
Bhat, TN ;
Weissig, H ;
Shindyalov, IN ;
Bourne, PE .
NUCLEIC ACIDS RESEARCH, 2000, 28 (01) :235-242
[2]   Low-resolution structures of proteins in solution retrieved from X-ray scattering with a genetic algorithm [J].
Chacón, P ;
Morán, F ;
Díaz, JF ;
Pantos, E ;
Andreu, JM .
BIOPHYSICAL JOURNAL, 1998, 74 (06) :2760-2775
[3]   THE SHAPES OF THE MOTOR DOMAINS OF 2 OPPOSITELY DIRECTED MICROTUBULE MOTORS, NOD AND KINESIN - A NEUTRON-SCATTERING STUDY [J].
FUJIWARA, S ;
KULL, FJ ;
SABLIN, EP ;
STONE, DB ;
MENDELSON, RA .
BIOPHYSICAL JOURNAL, 1995, 69 (04) :1563-1568
[5]   Modeling techniques for analysing conformational transitions in hemocyanins by small-angle scattering of X-rays and neutrons [J].
Hartmann, H ;
Müller, T ;
Decker, H .
MICRON, 2004, 35 (1-2) :11-13
[6]   Small-angle neutron scattering reveals an oxygen-dependent conformational change of the immunogen keyhole limpet hemocyanin type 1 (KLH1) [J].
Hartmann, H ;
Bongers, A ;
Decker, H .
EUROPEAN BIOPHYSICS JOURNAL WITH BIOPHYSICS LETTERS, 2001, 30 (06) :471-475
[7]   COMPARISON OF THE CRYSTAL AND SOLUTION STRUCTURES OF CALMODULIN AND TROPONIN-C [J].
HEIDORN, DB ;
TREWHELLA, J .
BIOCHEMISTRY, 1988, 27 (03) :909-915
[8]   Influence of multiple well defined conformations on small-angle scattering of proteins in solution [J].
Heller, WT .
ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY, 2005, 61 :33-44
[9]   Further insights into calmodulin-myosin light chain kinase interaction from solution scattering and shape restoration [J].
Heller, WT ;
Krueger, JK ;
Trewhella, J .
BIOCHEMISTRY, 2003, 42 (36) :10579-10588
[10]   Monte Carlo modeling of small-angle scattering data from non-interacting homogeneous and heterogeneous particles in solution [J].
Henderson, SJ .
BIOPHYSICAL JOURNAL, 1996, 70 (04) :1618-1627