Data of de novo assembly and functional annotation of the leaf transcriptome of Impatiens balsamina

被引：0
|
作者：
Foong, Lian Chee [1 ]
Ho, Anthony Siong Hock [1 ]
Yeo, Brandon Pei Hui [2 ]
Lim, Yang Mooi [3 ]
Tam, Sheh May [1 ]
机构：
[1] Taylors Univ, Sch Biosci, Fac Hlth & Med Sci, Jalan Taylors, Subang Jaya 47500, Selangor, Malaysia
[2] Swinburne Univ Technol, Fac Engn Comp & Sci, Sarawak Campus,Jalan Simpang Tiga, Kuching 93330, Malaysia
[3] Univ Tunku Abdul Rahman, Fac Med & Hlth Sci, Dept Preclin Sci, Lot PT 21144,Jalan Sungai Long, Kajang 43000, Selangor, Malaysia
来源：
DATA IN BRIEF | 2019年 / 23卷
关键词：
RECONSTRUCTION; GENERATION;
D O I：
10.1016/j.dib.2018.12.042
中图分类号：
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号：
07 ; 0710 ; 09 ;
摘要：
Impatiens balsamina is both an ornamental and pharmacologically important plant widely distributed in many Asian countries. The leaf of the plant contains many secondary metabolites possessing anti-microbial, anti-tumour and anti-cancer properties. Though there are many phytochemical studies done on the different natural extracts for this plant, not much of genetic information is currently available. This is the first transcriptome of I. balsamina leaf using paired-end Illumina HiSeq sequencing which generated 10.79 GB of raw data. Information of pre-processing (reads filtering), de novo assembly and functional annotation are presented. This data is accessible via NCBI BioProject (PRJNA505711). (C) 2019 The Authors. Published by Elsevier Inc.
引用
收藏
页数：5
相关论文
共 50 条
  • [31] De novo transcriptome assembly and gene annotation for the toxic dinoflagellate Dinophysis
    Chetan C. Gaonkar
    Lisa Campbell
    Scientific Data, 10
  • [32] De novo assembly and annotation of the marine mysid (Neomysis awatschensis) transcriptome
    Kim, Hui-Su
    Hwang, Dae-Sik
    Lee, Bo-Young
    Park, Jun Chul
    Lee, Young Hwan
    Lee, Jae-Seong
    MARINE GENOMICS, 2016, 28 : 41 - 43
  • [33] transXpress: a Snakemake pipeline for streamlined de novo transcriptome assembly and annotation
    Fallon, Timothy R.
    Calounova, Tereza
    Mokrejs, Martin
    Weng, Jing-Ke
    Pluskal, Tomas
    BMC BIOINFORMATICS, 2023, 24 (01)
  • [34] The Rhinella arenarum transcriptome: de novo assembly, annotation and gene prediction
    Guillermo Ceschin, Danilo
    Susana Pires, Natalia
    Noelia Mardirosian, Mariana
    Ines Lascano, Cecilia
    Venturino, Andres
    SCIENTIFIC REPORTS, 2020, 10 (01)
  • [35] transXpress: a Snakemake pipeline for streamlined de novo transcriptome assembly and annotation
    Timothy R. Fallon
    Tereza Čalounová
    Martin Mokrejš
    Jing-Ke Weng
    Tomáš Pluskal
    BMC Bioinformatics, 24
  • [36] De novo transcriptome assembly and gene annotation for the toxic dinoflagellate Dinophysis
    Gaonkar, Chetan C.
    Campbell, Lisa
    SCIENTIFIC DATA, 2023, 10 (01)
  • [37] De novo assembly and annotation of the Antarctic copepod (Tigriopus kingsejongensis) transcriptome
    Kim, Hui-Su
    Lee, Bo-Young
    Han, Jeonghoon
    Lee, Young Hwan
    Min, Gi-Sik
    Kim, Sanghee
    Lee, Jae-Seong
    MARINE GENOMICS, 2016, 28 : 37 - 39
  • [38] The transcriptome of a "sleeping" invader: de novo assembly and annotation of the transcriptome of aestivating Cornu aspersum
    Parmakelis, Aristeidis
    Kotsakiozi, Panayiota
    Kontos, Christos K.
    Adamopoulos, Panagiotis G.
    Scorilas, Andreas
    BMC GENOMICS, 2017, 18
  • [39] De novo assembly and functional annotation of blood transcriptome of loggerhead turtle, and in silico characterization of peroxiredoxins and thioredoxins
    Hernandez-Fernandez, Javier
    Pinzon Velasco, Andres Mauricio
    Lopez Barrera, Ellie Anne
    Rodriguez Becerra, Maria Del Pilar
    Luis Villanueva-Canas, Jose
    Alba, M. Mar
    Marino Ramirez, Leonardo
    PEERJ, 2021, 9
  • [40] De Novo transcriptome assembly for analysis and functional annotation of genes expressed in Alport syndrome iPSCs.
    Chen, Wenbiao
    Huang, Jianrong
    Dai, Yong
    BIOMEDICAL RESEARCH-INDIA, 2017, 28 (01): : 320 - 332
12345