Data of de novo assembly and functional annotation of the leaf transcriptome of Impatiens balsamina

被引：0

作者：

Foong, Lian Chee ^{[1
]}

Ho, Anthony Siong Hock ^{[1
]}

Yeo, Brandon Pei Hui ^{[2
]}

Lim, Yang Mooi ^{[3
]}

Tam, Sheh May ^{[1
]}

机构：

[1] Taylors Univ, Sch Biosci, Fac Hlth & Med Sci, Jalan Taylors, Subang Jaya 47500, Selangor, Malaysia

[2] Swinburne Univ Technol, Fac Engn Comp & Sci, Sarawak Campus,Jalan Simpang Tiga, Kuching 93330, Malaysia

[3] Univ Tunku Abdul Rahman, Fac Med & Hlth Sci, Dept Preclin Sci, Lot PT 21144,Jalan Sungai Long, Kajang 43000, Selangor, Malaysia

来源：

DATA IN BRIEF | 2019年 / 23卷

关键词：

RECONSTRUCTION; GENERATION;

D O I：

10.1016/j.dib.2018.12.042

中图分类号：

O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];

学科分类号：

07 ; 0710 ; 09 ;

摘要：

Impatiens balsamina is both an ornamental and pharmacologically important plant widely distributed in many Asian countries. The leaf of the plant contains many secondary metabolites possessing anti-microbial, anti-tumour and anti-cancer properties. Though there are many phytochemical studies done on the different natural extracts for this plant, not much of genetic information is currently available. This is the first transcriptome of I. balsamina leaf using paired-end Illumina HiSeq sequencing which generated 10.79 GB of raw data. Information of pre-processing (reads filtering), de novo assembly and functional annotation are presented. This data is accessible via NCBI BioProject (PRJNA505711). (C) 2019 The Authors. Published by Elsevier Inc.

引用

页数：5

共 12 条

[1]

[Anonymous], 2011, FastQC: a quality control tool for high throughput sequence data

[2] Trimmomatic: a flexible trimmer for Illumina sequence data [J].

Bolger, Anthony M. ;

Lohse, Marc ;

Usadel, Bjoern .

BIOINFORMATICS, 2014, 30 (15) :2114-2120

[3]

Foong L. C., 2018, PLANT GENE

[4]

Foong Lian Chee, 2017, Malaysian Applied Biology, V46, P87

[5] High-throughput functional annotation and data mining with the Blast2GO suite [J].

Gotz, Stefan ;

Garcia-Gomez, Juan Miguel ;

Terol, Javier ;

Williams, Tim D. ;

Nagaraj, Shivashankar H. ;

Nueda, Maria Jose ;

Robles, Montserrat ;

Talon, Manuel ;

Dopazo, Joaquin ;

Conesa, Ana .

NUCLEIC ACIDS RESEARCH, 2008, 36 (10) :3420-3435

[6] Full-length transcriptome assembly from RNA-Seq data without a reference genome [J].

Grabherr, Manfred G. ;

Haas, Brian J. ;

Yassour, Moran ;

Levin, Joshua Z. ;

Thompson, Dawn A. ;

Amit, Ido ;

Adiconis, Xian ;

Fan, Lin ;

Raychowdhury, Raktima ;

Zeng, Qiandong ;

Chen, Zehua ;

Mauceli, Evan ;

Hacohen, Nir ;

Gnirke, Andreas ;

Rhind, Nicholas ;

di Palma, Federica ;

Birren, Bruce W. ;

Nusbaum, Chad ;

Lindblad-Toh, Kerstin ;

Friedman, Nir ;

Regev, Aviv .

NATURE BIOTECHNOLOGY, 2011, 29 (07) :644-U130

[7] De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis [J].

Haas, Brian J. ;

Papanicolaou, Alexie ;

Yassour, Moran ;

Grabherr, Manfred ;

Blood, Philip D. ;

Bowden, Joshua ;

Couger, Matthew Brian ;

Eccles, David ;

Li, Bo ;

Lieber, Matthias ;

MacManes, Matthew D. ;

Ott, Michael ;

Orvis, Joshua ;

Pochet, Nathalie ;

Strozzi, Francesco ;

Weeks, Nathan ;

Westerman, Rick ;

William, Thomas ;

Dewey, Colin N. ;

Henschel, Robert ;

Leduc, Richard D. ;

Friedman, Nir ;

Regev, Aviv .

NATURE PROTOCOLS, 2013, 8 (08) :1494-1512

[8] MTML-msBayes: Approximate Bayesian comparative phylogeographic inference from multiple taxa and multiple loci with rate heterogeneity [J].

Huang, Wen ;

Takebayashi, Naoki ;

Qi, Yan ;

Hickerson, Michael J. .

BMC BIOINFORMATICS, 2011, 12

[9] Ultrafast and memory-efficient alignment of short DNA sequences to the human genome [J].

Langmead, Ben ;

Trapnell, Cole ;

Pop, Mihai ;

Salzberg, Steven L. .

GENOME BIOLOGY, 2009, 10 (03)

[10] KAAS: an automatic genome annotation and pathway reconstruction server [J].

Moriya, Yuki ;

Itoh, Masumi ;

Okuda, Shujiro ;

Yoshizawa, Akiyasu C. ;

Kanehisa, Minoru .

NUCLEIC ACIDS RESEARCH, 2007, 35 :W182-W185

← 1 2 →