An optimized protocol for large-scale in situ sampling and analysis of volatile organic compounds

被引:8
|
作者
Nair, Jyothi V. [1 ]
Shanmugam, Pragadheesh V. [1 ]
Karpe, Snehal D. [1 ]
Ramakrishnan, Uma [1 ]
Olsson, Shannon [1 ]
机构
[1] Tata Inst Fundamental Res, Natl Ctr Biol Sci, Bangalore, Karnataka, India
来源
ECOLOGY AND EVOLUTION | 2018年 / 8卷 / 11期
关键词
chemical ecology; gas chromatography; lek mating; mass spectrometry; pheromones; polydimethylsiloxane; random forests; regression; volatiles; STATISTICAL-ANALYSIS; SPECTROMETRY DATA; COMMUNICATION; RECOGNITION; ATTRACTION; CHALLENGES; ECOLOGY; ODOR;
D O I
10.1002/ece3.4138
中图分类号
Q14 [生态学(生物生态学)];
学科分类号
071012 ; 0713 ;
摘要
Chemical ecology is an ever-expanding field with a growing interest in population- and community-level studies. Many such studies are hindered due to lack of an efficient and accelerated protocol for large-scale sampling and analysis of chemical compounds. Here, we present an optimized protocol for such large-scale study of volatiles. A large-scale in situ study to understand role of semiochemicals in variation in mating success of lekking blackbuck was conducted. Suitable methods for sampling and statistical analysis were identified by testing and comparing the efficiencies of available techniques to reduce analysis time while retaining sensitivity and comprehensiveness. Solid-phase extraction using polydimethylsiloxane, analysis using a semiautomated detection of retention time and base peak, and statistical analysis using random forest algorithm were identified as the most efficient methods for large-scale in situ sampling and analysis of volatiles. The protocol for large-scale volatile analysis can facilitate evolutionary and metaecological studies of volatiles in situ from all types of biological samples. The protocol has potential for wider application with the analysis and interpretation methods being suitable for all kinds of semiochemicals, including nonvolatile chemicals.
引用
收藏
页码:5924 / 5936
页数:13
相关论文
共 50 条
  • [41] Optimized localization in large-scale heterogeneous WSN
    Kumar, Sumit
    Batra, Neera
    Kumar, Shrawan
    JOURNAL OF SUPERCOMPUTING, 2023, 79 (06): : 6705 - 6729
  • [42] Optimized localization in large-scale heterogeneous WSN
    Sumit Kumar
    Neera Batra
    Shrawan Kumar
    The Journal of Supercomputing, 2023, 79 : 6705 - 6729
  • [43] VALIDATION STUDIES OF THE PROTOCOL FOR THE VOLATILE ORGANIC-SAMPLING TRAIN
    FUERST, RG
    LOGAN, TJ
    MIDGETT, MR
    PROHASKA, J
    JAPCA-THE INTERNATIONAL JOURNAL OF AIR POLLUTION CONTROL AND HAZARDOUS WASTE MANAGEMENT, 1987, 37 (04): : 388 - 394
  • [44] Protistan community analysis: key findings of a large-scale molecular sampling
    Grossmann, Lars
    Jensen, Manfred
    Heider, Dominik
    Jost, Steffen
    Glucksman, Edvard
    Hartikainen, Hanna
    Mahamdallie, Shazia S.
    Gardner, Michelle
    Hoffmann, Daniel
    Bass, David
    Boenigk, Jens
    ISME JOURNAL, 2016, 10 (09): : 2269 - 2279
  • [45] Protistan community analysis: key findings of a large-scale molecular sampling
    Lars Grossmann
    Manfred Jensen
    Dominik Heider
    Steffen Jost
    Edvard Glücksman
    Hanna Hartikainen
    Shazia S Mahamdallie
    Michelle Gardner
    Daniel Hoffmann
    David Bass
    Jens Boenigk
    The ISME Journal, 2016, 10 : 2269 - 2279
  • [46] Large-scale cytological profiling for functional analysis of bioactive compounds
    Woehrmann, Marcos H.
    Bray, Walter M.
    Durbin, James K.
    Nisam, Sean C.
    Michael, Alicia K.
    Glassey, Emerson
    Stuart, Joshua M.
    Lokey, R. Scott
    MOLECULAR BIOSYSTEMS, 2013, 9 (11) : 2604 - 2617
  • [47] In situ measurements of volatile organic compounds in a boreal forest
    Hakola, H.
    Hellen, H.
    Hemmila, M.
    Rinne, J.
    Kulmala, M.
    ATMOSPHERIC CHEMISTRY AND PHYSICS, 2012, 12 (23) : 11665 - 11678
  • [48] Sampling and gas chromatographic analysis of volatile organic compounds in hot and extremely humid emissions
    Knobloch, Th.
    Engewald, W.
    Journal of High Resolution Chromatography, 1995, 18 (10):
  • [49] Analysis of volatile organic compounds from deep airway in the lung through intubation sampling
    Wei Xu
    Jin Zhang
    Houwen Ding
    Yueting Ding
    Xue Zou
    Min Yang
    Qiang Zhou
    Zhou Liu
    Ling Zheng
    Heping Zuo
    Dianlong Ge
    Qiangling Zhang
    Chaoqun Huang
    Chengyin Shen
    Yannan Chu
    Analytical and Bioanalytical Chemistry, 2022, 414 : 7647 - 7658
  • [50] Advanced unified monophasic lipid extraction protocol with wide coverage on the polarity scale optimized for large-scale untargeted clinical lipidomics analysis of platelets
    Fu, Xiaoqing
    Calder, Carlos
    Harm, Tobias
    Gawaz, Meinrad
    Lammerhofer, Michael
    ANALYTICA CHIMICA ACTA, 2022, 1221