Accurate base composition of double-strand DNA by mass spectrometry

被引:28
作者
Aaserud, DJ [1 ]
Kelleher, NL [1 ]
Little, DP [1 ]
McLafferty, FW [1 ]
机构
[1] CORNELL UNIV,DEPT CHEM,BAKER LAB CHEM,ITHACA,NY 14853
基金
美国国家卫生研究院;
关键词
D O I
10.1016/S1044-0305(96)00194-8
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
An accurate molecular weight (M(r)) assignment for a double-strand (ds) DNA determines or greatly restricts the possible number of each of its four bases, while the compositions for its two single-strand (ss) components can also be derived from their M(r) values. For a ds 64-mer (39 kDa), the ss-MI values (+/-0.5 Da) of its high-resolution mass spectrum from an electrospray ionization/Fourier transform instrument yield only the correct ds- and ss-base compositions. Literature mass spectra of lower mass accuracy show that such data can also restrict their possible composition assignments, with further discrimination using the abundance vs. base composition of small fragment ions from the dissociation of the ss molecular ions. (C) 1996 American Society for Mass Spectrometry.
引用
收藏
页码:1266 / 1269
页数:4
相关论文
共 29 条
[1]   FOURIER-TRANSFORM ELECTROSPRAY INSTRUMENTATION FOR TANDEM HIGH-RESOLUTION MASS-SPECTROMETRY OF LARGE MOLECULES [J].
BEU, SC ;
SENKO, MW ;
QUINN, JP ;
WAMPLER, FM ;
MCLAFFERTY, FW .
JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY, 1993, 4 (07) :557-565
[2]   TRAPPING, DETECTION, AND MASS DETERMINATION OF COLIPHAGE T4 DNA IONS OF 10(8) DA BY ELECTROSPRAY-IONIZATION FOURIER-TRANSFORM ION-CYCLOTRON RESONANCE MASS-SPECTROMETRY [J].
CHEN, RD ;
CHENG, XH ;
MITCHELL, DW ;
HOFSTADLER, SA ;
WU, QY ;
ROCKWOOD, AL ;
SHERMAN, MG ;
SMITH, RD .
ANALYTICAL CHEMISTRY, 1995, 67 (07) :1159-1163
[3]  
CLEGG GA, 1989, SCIENCE, V246, P64
[4]   SPECIFIC AND NONSPECIFIC DIMER FORMATION IN THE ELECTROSPRAY-IONIZATION MASS-SPECTROMETRY OF OLIGONUCLEOTIDES [J].
DING, JM ;
ANDEREGG, RJ .
JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY, 1995, 6 (03) :159-164
[5]   ANALYSIS OF POLYMERASE CHAIN REACTION-AMPLIFIED DNA PRODUCTS BY MASS-SPECTROMETRY USING MATRIX-ASSISTED LASER-DESORPTION AND ELECTROSPRAY - CURRENT STATUS [J].
DOKTYCZ, MJ ;
HURST, GB ;
HABIBIGOUDARZI, S ;
MCLUCKEY, SA ;
TANG, K ;
CHEN, CH ;
UZIEL, M ;
JACOBSON, KB ;
WOYCHIK, RP ;
BUCHANAN, MV .
ANALYTICAL BIOCHEMISTRY, 1995, 230 (02) :205-214
[6]   ACCUMULATION AND STORAGE OF IONIZED DUPLEX DNA-MOLECULES IN A QUADRUPOLE ION-TRAP [J].
DOKTYCZ, MJ ;
HABIBIGOUDARZI, S ;
MCLUCKEY, SA .
ANALYTICAL CHEMISTRY, 1994, 66 (20) :3416-3422
[7]   OBSERVATION OF DUPLEX DNA-DRUG NONCOVALENT COMPLEXES BY ELECTROSPRAY-IONIZATION MASS-SPECTROMETRY [J].
GALE, DC ;
GOODLETT, DR ;
LIGHTWAHL, KJ ;
SMITH, RD .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1994, 116 (13) :6027-6028
[8]   DETECTION OF OLIGONUCLEOTIDE DUPLEX FORMS BY ION-SPRAY MASS-SPECTROMETRY [J].
GANEM, B ;
LI, YT ;
HENION, JD .
TETRAHEDRON LETTERS, 1993, 34 (09) :1445-1448
[9]   UTILITY OF ORGANIC-BASES FOR IMPROVED ELECTROSPRAY MASS-SPECTROMETRY OF OLIGONUCLEOTIDES [J].
GREIG, M ;
GRIFFEY, RH .
RAPID COMMUNICATIONS IN MASS SPECTROMETRY, 1995, 9 (01) :97-102
[10]   THIAMINASE-I (42-KDA) HETEROGENEITY, SEQUENCE REFINEMENT, AND ACTIVE-SITE LOCATION FROM HIGH-RESOLUTION TANDEM MASS-SPECTROMETRY [J].
KELLEHER, NL ;
COSTELLO, CA ;
BEGLEY, TP ;
MCLAFFERTY, FW .
JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY, 1995, 6 (10) :981-984