Complete and Draft Genome Sequences of Six Members of the Aquificales

被引:63
作者
Reysenbach, Anna-Louise [1 ]
Hamamura, N. [1 ]
Podar, M. [2 ]
Griffiths, E. [3 ]
Ferreira, S. [7 ]
Hochstein, R. [8 ]
Heidelberg, J. [9 ]
Johnson, J. [7 ]
Mead, D. [10 ]
Pohorille, A. [11 ]
Sarmiento, M. [7 ]
Schweighofer, K. [6 ]
Seshadri, R. [5 ]
Voytek, M. A. [4 ]
机构
[1] Portland State Univ, Dept Biol, Portland, OR 97201 USA
[2] Oak Ridge Natl Lab, Biosci Div, Oak Ridge, TN 37831 USA
[3] McMaster Univ, Dept Biochem & Biomed Sci, Hamilton, ON L8S 4L8, Canada
[4] US Geol Survey, Reston, VA 20192 USA
[5] Synth Genom Inc, La Jolla, CA 92037 USA
[6] Affymetrix Corp, Santa Clara, CA 95051 USA
[7] J Craig Venter Inst, Rockville, MD 20850 USA
[8] Montana State Univ, Bozeman, MT 59715 USA
[9] Univ So Calif, Wrigley Inst Environm Studies, Dept Biol Sci, Avalon, CA 90704 USA
[10] Lucigen Corp, Middleton, WI 53562 USA
[11] NASA, Ames Res Ctr, Exobiol Branch, Moffett Field, CA 94025 USA
基金
美国国家科学基金会;
关键词
BACTERIUM AQUIFEX-AEOLICUS; SP NOV; SULFURIHYDROGENIBIUM-AZORENSE; MICROBIAL GENOMES;
D O I
10.1128/JB.01645-08
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
The Aquificales are widespread in marine and terrestrial hydrothermal environments. Here, we report the complete and draft genome sequences of six new members of the Aquificales: two marine species, Persephonella marina strain EX-H1 and Hydrogenivirga strain 128-5-R1 (from the East Pacific Rise, 9 degrees 50.3'N, 104 degrees 17.5'W, and the Eastern Lau Spreading Center, 176 degrees 11.5'W, 20 degrees 45.8'S, respectively), and four terrestrial isolates, Sulfurihydrogenibium azorense strain Az-Fu1, Sulfurihydrogenibium yellowstonense strain SS-5, and Sulfurihydrogenibium strain Y03AOP1 (from Furnas, Azores, Portugal, and Calcite Springs and Obsidian Pool in Yellowstone National Park, United States, respectively), and the only thermoacidophilic isolate, Hydrogenobaculum strain Y04AAS1 (from a stream adjacent to Obsidian Pool). Significant differences among the different species exist that include nitrogen metabolism, hydrogen utilization, chemotaxis, and signal transduction, providing insights into their ecological niche adaptations.
引用
收藏
页码:1992 / 1993
页数:2
相关论文
共 10 条
[1]   Sulfurihydrogenibium azorense, sp nov., a thermophilic hydrogen-oxidizing microaerophile from terrestrial hot springs in the Azores [J].
Aguiar, P ;
Beveridge, TJ ;
Reysenbach, AL .
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2004, 54 :33-39
[2]   The complete genome of the hyperthermophilic bacterium Aquifex aeolicus [J].
Deckert, G ;
Warren, PV ;
Gaasterland, T ;
Young, WG ;
Lenox, AL ;
Graham, DE ;
Overbeek, R ;
Snead, MA ;
Keller, M ;
Aujay, M ;
Huber, R ;
Feldman, RA ;
Short, JM ;
Olsen, GJ ;
Swanson, RV .
NATURE, 1998, 392 (6674) :353-358
[3]   A Sanger/pyrosequencing hybrid approach tor the generation of high-quality draft assemblies of marine microbial genomes [J].
Goldberg, Susanne M. D. ;
Johnson, Justin ;
Busam, Dana ;
Feldblyum, Tamara ;
Ferriera, Steve ;
Friedman, Robert ;
Halpern, Aaron ;
Khouri, Hoda ;
Kravitz, Saul A. ;
Lauro, Federico M. ;
Li, Kelvin ;
Rogers, Yu-Hui ;
Strausberg, Robert ;
Sutton, Granger ;
Tallon, Luke ;
Thomas, Torsten ;
Venter, Eli ;
Frazier, Marvin ;
Venter, J. Craig .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2006, 103 (30) :11240-11245
[4]  
Götz D, 2002, INT J SYST EVOL MICR, V52, P1349, DOI [10.1099/ijs.0.02126-0, 10.1099/00207713-52-4-1349]
[5]   Hydrogen metabolism in the hyperthermophilic bacterium Aquifex aeolicus [J].
Guiral, M ;
Aubert, T ;
Giudici-Orticoni, MT .
BIOCHEMICAL SOCIETY TRANSACTIONS, 2005, 33 :22-24
[6]   The genome sequence of the anaerobic, sulfate-reducing bacterium Desulfovibrio vulgaris Hildenborough [J].
Heidelberg, JF ;
Seshadri, R ;
Haveman, SA ;
Hemme, CL ;
Paulsen, IT ;
Kolonay, JF ;
Eisen, JA ;
Ward, N ;
Methe, B ;
Brinkac, LM ;
Daugherty, SC ;
Deboy, RT ;
Dodson, RJ ;
Durkin, AS ;
Madupu, R ;
Nelson, WC ;
Sullivan, SA ;
Fouts, D ;
Haft, DH ;
Selengut, J ;
Peterson, JD ;
Davidsen, TM ;
Zafar, N ;
Zhou, LW ;
Radune, D ;
Dimitrov, G ;
Hance, M ;
Tran, K ;
Khouri, H ;
Gill, J ;
Utterback, TR ;
Feldblyum, TV ;
Wall, JD ;
Voordouw, G ;
Fraser, CM .
NATURE BIOTECHNOLOGY, 2004, 22 (05) :554-559
[7]   Autotrophic CO2 fixation via the reductive tricarboxylic acid cycle in different lineages within the phylum Aquificae:: evidence for two ways of citrate cleavage [J].
Hugler, Michael ;
Huber, Harald ;
Molyneaux, Stephen J. ;
Vetriani, Costantino ;
Sievert, Stefan M. .
ENVIRONMENTAL MICROBIOLOGY, 2007, 9 (01) :81-92
[8]   The integrated microbial genomes (IMG) system in 2007: data content and analysis tool extensions [J].
Markowitz, Victor M. ;
Szeto, Ernest ;
Palaniappan, Krishna ;
Grechkin, Yuri ;
Chu, Ken ;
Chen, I-Min A. ;
Dubchak, Inna ;
Anderson, Iain ;
Lykidis, Athanasios ;
Mavromatis, Konstantinos ;
Ivanova, Natalia N. ;
Kyrpides, Nikos C. .
NUCLEIC ACIDS RESEARCH, 2008, 36 :D528-D533
[9]   Sulfurihydrogenibium yellowstonense sp nov., an extremely thermophilic, facultatively heterotrophic, sulfur-oxidizing bacterium from Yellowstone National Park, and emended descriptions of the genus Sulfurihydrogenibium, Sulfurihydrogenibium subterraneum and Sulfurihydrogenibium azorense [J].
Nakagawa, S ;
Shtaih, Z ;
Banta, A ;
Beveridge, TJ ;
Sako, Y ;
Reysenbach, AL .
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2005, 55 :2263-2268
[10]  
Reysenbach A.-L., 2005, GEOTHERMAL BIOL GEOC, P129